Variant report

Variant	rs2066366
Chromosome Location	chr6:144063529-144063530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144063490..144065500-chr6:144068197..144069773,2	K562	blood:
2	chr6:144060296..144062270-chr6:144062738..144065749,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12212893	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1342330	0.88[EUR][1000 genomes]
rs2064528	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2180032	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55767626	0.88[EUR][1000 genomes]
rs6570580	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9321941	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403528	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144022800-144064200	Weak transcription	NH-A	brain
2	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:144038600-144075400	Weak transcription	NHEK	skin
5	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:144047800-144064200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:144048400-144063600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:144048400-144063800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:144053600-144073600	Weak transcription	Osteobl	bone
14	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:144056000-144063800	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:144056000-144065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:144056000-144067600	Weak transcription	K562	blood
20	chr6:144056200-144063800	Weak transcription	Fetal Kidney	kidney
21	chr6:144056200-144064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:144056800-144063600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:144056800-144065600	Weak transcription	HUVEC	blood vessel
25	chr6:144057000-144063600	Weak transcription	Fetal Lung	lung
26	chr6:144057400-144064200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:144057600-144063800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:144058000-144064400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:144059200-144064000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:144059800-144063600	Weak transcription	Aorta	Aorta
31	chr6:144059800-144077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:144060000-144066400	Weak transcription	Fetal Brain Female	brain
33	chr6:144060200-144065200	Enhancers	Placenta	Placenta
34	chr6:144060200-144078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:144060600-144074600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr6:144060800-144074400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:144061000-144079800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
39	chr6:144061200-144064600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr6:144061400-144064000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:144061400-144064600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:144061400-144064800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:144061800-144064400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:144062400-144063600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:144062400-144064800	Weak transcription	Colonic Mucosa	Colon
46	chr6:144062600-144064000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:144062800-144066400	Enhancers	Stomach Mucosa	stomach
48	chr6:144063000-144075400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:144063200-144063800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:144063200-144063800	Genic enhancers	Fetal Muscle Leg	muscle

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