Variant report

Variant	rs2066372
Chromosome Location	chr1:71667205-71667206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17090765	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs17090773	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs17090819	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090951	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090963	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17091059	0.87[AFR][1000 genomes]
rs17091089	0.87[AFR][1000 genomes]
rs17091091	0.87[AFR][1000 genomes]
rs17091093	0.87[AFR][1000 genomes]
rs17091097	0.87[AFR][1000 genomes]
rs17091100	0.87[AFR][1000 genomes]
rs17091103	0.87[AFR][1000 genomes]
rs17091105	0.87[AFR][1000 genomes]
rs17091108	0.87[AFR][1000 genomes]
rs17263033	0.87[AFR][1000 genomes]
rs2421872	1.00[YRI][hapmap]
rs57007191	0.87[AFR][1000 genomes]
rs58577333	0.87[AFR][1000 genomes]
rs60585297	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71665600-71672400	Weak transcription	Pancreas	Pancrea
2	chr1:71666800-71667400	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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