Variant report

Variant	rs206742
Chromosome Location	chr6:164520577-164520578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs172272	0.84[AFR][1000 genomes]
rs185915	1.00[AMR][1000 genomes]
rs185916	1.00[AMR][1000 genomes]
rs206711	1.00[AMR][1000 genomes]
rs206737	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs391695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164515000-164522800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:164517800-164522000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:164518000-164520800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:164518200-164521000	Enhancers	Fetal Muscle Leg	muscle
6	chr6:164518800-164523000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:164519000-164520600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:164519000-164520800	Enhancers	K562	blood
9	chr6:164519000-164528400	Weak transcription	Psoas Muscle	Psoas
10	chr6:164519400-164521200	Enhancers	NH-A	brain
11	chr6:164519800-164520600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:164519800-164520600	Enhancers	Lung	lung
13	chr6:164519800-164520800	Enhancers	Pancreas	Pancrea
14	chr6:164519800-164521000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:164519800-164521600	Enhancers	Fetal Brain Male	brain
16	chr6:164519800-164521600	Enhancers	Left Ventricle	heart
17	chr6:164519800-164525000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:164520000-164520600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:164520000-164520600	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr6:164520000-164520600	Enhancers	Right Atrium	heart
21	chr6:164520000-164520800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:164520000-164520800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:164520000-164521000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:164520000-164521000	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr6:164520000-164521600	Enhancers	Fetal Muscle Trunk	muscle
26	chr6:164520000-164521800	Enhancers	Fetal Heart	heart
27	chr6:164520200-164520600	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr6:164520200-164520800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:164520200-164521000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:164520200-164521800	Weak transcription	Right Ventricle	heart
31	chr6:164520200-164522400	Weak transcription	Placenta	Placenta
32	chr6:164520200-164522800	Weak transcription	Spleen	Spleen
33	chr6:164520200-164523000	Weak transcription	HSMM	muscle
34	chr6:164520200-164528600	Weak transcription	Esophagus	oesophagus
35	chr6:164520400-164520600	Active TSS	Fetal Brain Female	brain
36	chr6:164520400-164521000	Active TSS	Brain Cingulate Gyrus	brain
37	chr6:164520400-164521000	Active TSS	Brain Hippocampus Middle	brain
38	chr6:164520400-164521000	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr6:164520400-164521000	Active TSS	Brain Substantia Nigra	brain
40	chr6:164520400-164521600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr6:164520400-164522800	Weak transcription	HUVEC	blood vessel
42	chr6:164520400-164523400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:164520400-164529200	Weak transcription	Adipose Nuclei	Adipose

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