Variant report

Variant	rs2068169
Chromosome Location	chr1:185566539-185566540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10465494	1.00[AMR][1000 genomes]
rs73058365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185563800-185568800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:185564000-185568400	Weak transcription	Spleen	Spleen
3	chr1:185564000-185568800	Weak transcription	Stomach Mucosa	stomach
4	chr1:185564600-185567000	Weak transcription	Primary B cells from cord blood	blood
5	chr1:185564600-185567200	Weak transcription	Fetal Heart	heart
6	chr1:185565200-185567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:185565200-185568600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:185565600-185567200	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links