Variant report

Variant	rs2068858
Chromosome Location	chr4:31102924-31102925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10517223	1.00[ASN][1000 genomes]
rs13340304	1.00[ASN][1000 genomes]
rs17724390	1.00[ASN][1000 genomes]
rs34335740	1.00[ASN][1000 genomes]
rs59015823	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837112	1.00[ASN][1000 genomes]
rs7669969	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31088800-31105200	Weak transcription	Fetal Lung	lung
2	chr4:31102000-31105800	Weak transcription	Fetal Brain Male	brain
3	chr4:31102200-31105400	Weak transcription	Fetal Brain Female	brain
4	chr4:31102400-31105200	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:31102400-31106200	Weak transcription	Aorta	Aorta
6	chr4:31102600-31103000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:31102600-31105400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:31102600-31105800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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