Variant report

Variant	rs2069502
Chromosome Location	chr12:58144665-58144666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:56)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:56 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:58144100-58147043	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr12:58144509-58146962	K562	blood:	n/a	n/a
3	POLR2A	chr12:58144474-58146332	GM12891	blood:	n/a	n/a
4	POLR2A	chr12:58144170-58146625	Hela-S3	cervix:	n/a	n/a
5	WRNIP1	chr12:58144572-58146586	GM12878	blood:	n/a	n/a
6	POLR2A	chr12:58144208-58146680	GM18505	blood:	n/a	n/a
7	POLR2A	chr12:58144638-58146721	GM18951	blood:	n/a	n/a
8	POLR2A	chr12:58144525-58144737	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr12:58144414-58146731	GM19099	blood:	n/a	n/a
10	POLR2A	chr12:58144292-58146326	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr12:58144023-58146704	K562	blood:	n/a	n/a
12	POLR2A	chr12:58144401-58146211	U87	brain:	n/a	n/a
13	POLR2A	chr12:58144461-58146735	K562	blood:	n/a	n/a
14	POLR2A	chr12:58144044-58146752	GM12878	blood:	n/a	n/a
15	POLR2A	chr12:58144594-58145149	ProgFib	skin:	n/a	n/a
16	POLR2A	chr12:58144463-58144726	GM12891	blood:	n/a	n/a
17	POLR2A	chr12:58144636-58146589	PANC-1	pancreas:	n/a	n/a
18	POLR2A	chr12:58144138-58146600	K562	blood:	n/a	n/a
19	POLR2A	chr12:58143986-58146704	MCF-7	breast:	n/a	n/a
20	POLR2A	chr12:58143976-58146339	GM12892	blood:	n/a	n/a
21	EP300	chr12:58144390-58147030	SK-N-SH	brain:	n/a	chr12:58145773-58145780 chr12:58146625-58146632 chr12:58145997-58146013 chr12:58146991-58147005
22	POLR2A	chr12:58144145-58147295	HepG2	liver:	n/a	n/a
23	POLR2A	chr12:58144345-58145108	GM12891	blood:	n/a	n/a
24	POLR2A	chr12:58143933-58146798	GM12891	blood:	n/a	n/a
25	JUN	chr12:58144345-58147068	K562	blood:	n/a	chr12:58145912-58145921 chr12:58145680-58145688 chr12:58145680-58145687
26	POLR2A	chr12:58144142-58146803	U87	brain:	n/a	n/a
27	POLR2A	chr12:58144156-58146867	PBDE	blood:	n/a	n/a
28	POLR2A	chr12:58144141-58146736	HepG2	liver:	n/a	n/a
29	POLR2A	chr12:58143923-58146757	SK-N-SH	brain:	n/a	n/a
30	POLR2A	chr12:58144450-58146609	GM12878	blood:	n/a	n/a
31	POLR2A	chr12:58143934-58145276	K562	blood:	n/a	n/a
32	HEY1	chr12:58144366-58146314	K562	blood:	n/a	n/a
33	POLR2A	chr12:58144531-58146700	GM19193	blood:	n/a	n/a
34	POLR2A	chr12:58144647-58144728	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr12:58144333-58146345	GM12891	blood:	n/a	n/a
36	POLR2A	chr12:58144471-58146318	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr12:58143966-58146672	PFSK-1	brain:	n/a	n/a
38	POLR2A	chr12:58144501-58146382	HepG2	liver:	n/a	n/a
39	POLR2A	chr12:58144118-58146429	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr12:58144042-58146725	MCF10A-Er-Src	breast:	n/a	n/a
41	POLR2A	chr12:58144138-58146568	PFSK-1	brain:	n/a	n/a
42	POLR2A	chr12:58144146-58146454	GM12892	blood:	n/a	n/a
43	POLR2A	chr12:58142700-58146674	K562	blood:	n/a	n/a
44	POLR2A	chr12:58144556-58146249	GM12892	blood:	n/a	n/a
45	POLR2A	chr12:58138226-58146709	K562	blood:	n/a	n/a
46	MXI1	chr12:58144329-58147210	SK-N-SH	brain:	n/a	chr12:58146430-58146445 chr12:58146432-58146447 chr12:58146283-58146292
47	POLR2A	chr12:58144449-58146647	ECC-1	luminal epithelium:	n/a	n/a
48	POLR2A	chr12:58144383-58144861	H1-hESC	embryonic stem cell:	n/a	n/a
49	POLR2A	chr12:58144596-58146261	GM12878	blood:	n/a	n/a
50	POLR2A	chr12:58144287-58146490	HL-60	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:57940172..57943060-chr12:58144511..58146770,2	K562	blood:
2	chr12:57853636..57856322-chr12:58144624..58147677,3	K562	blood:
3	chr12:57853636..57856322-chr12:58144624..58146178,2	K562	blood:
4	chr12:57975136..57977432-chr12:58144177..58146349,2	K562	blood:
5	chr12:57983000..57984965-chr12:58144459..58146652,2	MCF-7	breast:
6	chr12:57999383..58001566-chr12:58144554..58147066,2	K562	blood:
7	chr12:57921185..57924132-chr12:58144470..58146639,2	MCF-7	breast:
8	chr12:58144058..58148099-chr12:58238749..58241436,3	K562	blood:
9	chr12:57909291..57914221-chr12:58144639..58148673,6	K562	blood:

No data

Variant related genes	Relation type
CDK4	TF binding region
MARCH9	TF binding region
ENSG00000208028	Chromatin interaction
ENSG00000175215	Chromatin interaction
ENSG00000111087	Chromatin interaction
ENSG00000166987	Chromatin interaction
ENSG00000155980	Chromatin interaction
ENSG00000175203	Chromatin interaction
ENSG00000166908	Chromatin interaction
ENSG00000178498	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 45 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1021469	0.92[CEU][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.85[EUR][1000 genomes]
rs10431505	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10431552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10747783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10783847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10783848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10783850	1.00[LWK][hapmap]
rs10783851	1.00[LWK][hapmap]
rs10783853	1.00[LWK][hapmap];0.85[YRI][hapmap]
rs10877011	0.84[CEU][hapmap];0.80[GIH][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10877012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10877013	0.96[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10877014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877016	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877017	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10877018	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10877019	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11172333	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11172335	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11172342	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11172343	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11172344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11172349	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172350	0.91[EUR][1000 genomes]
rs11172351	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172369	0.85[YRI][hapmap]
rs11172371	0.85[YRI][hapmap]
rs1599931	0.82[JPT][hapmap];0.85[YRI][hapmap]
rs1599932	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1689585	0.83[GIH][hapmap]
rs1875124	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1875125	0.83[JPT][hapmap];0.85[YRI][hapmap]
rs2014886	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2069506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2072052	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291617	1.00[CEU][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3782130	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3825079	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4646536	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4760332	0.83[JPT][hapmap];1.00[LWK][hapmap]
rs56177740	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6581155	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap]
rs701008	0.81[GIH][hapmap]
rs703842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs724834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7965287	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8181644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs870392	0.83[JPT][hapmap];1.00[LWK][hapmap];0.85[YRI][hapmap]
rs871871	0.83[JPT][hapmap]
rs923829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9652011	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038741	chr12:57877355-58174506	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
2	nsv541503	chr12:57877355-58174506	Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	nsv899121	chr12:58079825-58177292	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv559045	chr12:58112189-58165085	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv470296	chr12:58112189-58177292	Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
6	nsv899123	chr12:58118248-58155023	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv826384	chr12:58124758-58157850	Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv510601	chr12:58130298-58191925	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
9	nsv470297	chr12:58133256-58202419	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
10	nsv826386	chr12:58135303-58150535	Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv973963	chr12:58138245-58145482	Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:45)

SNP	Gene	Cis/trans	Tissue	Source
rs2069502	TSFM	cis	Muscle Skeletal	GTEx
rs2069502	XRCC6BP1	cis	brain	seeQTL
rs2069502	TSPAN31	cis	parietal	SCAN
rs2069502	XRCC6BP1	cis	Whole Blood	GTEx
rs2069502	KRT75	cis	cerebellum	SCAN
rs2069502	CDK4	cis	cerebellum	SCAN
rs2069502	FAM119B	cis	lymphoblastoid	seeQTL
rs2069502	HSD17B6	cis	cerebellum	SCAN
rs2069502	ESPL1	cis	parietal	SCAN
rs2069502	TSFM	Cis_1M	lymphoblastoid	RTeQTL
rs2069502	FAM119B	cis	frontal cortex	BrainEAC
rs2069502	XRCC6BP1	cis	multi-tissue	Pritchard
rs2069502	FAM119B	cis	Brain Pons	GTEx
rs2069502	CYP27B1	cis	Thyroid	GTEx
rs2069502	FAM119B	cis	parietal	SCAN
rs2069502	TENC1	cis	cerebellum	SCAN
rs2069502	FAM119B	cis	Lymphoblastoid	GTEx
rs2069502	KRT5	cis	cerebellum	SCAN
rs2069502	METTL21B	cis	Esophagus Muscularis	GTEx
rs2069502	TSPAN31	cis	multi-tissue	Pritchard
rs2069502	FAM119B	cis	occipital cortex	BrainEAC
rs2069502	FAM119B	cis	hippocampus	BrainEAC
rs2069502	FAM119B	cis	Frontal Cortex	GTEx
rs2069502	METTL21B	cis	lung	GTEx
rs2069502	FAM119B	cis	cerebellum	SCAN
rs2069502	FAM119B	cis	Cerebellum	GTEx
rs2069502	METTL21B	cis	Esophagus Mucosa	GTEx
rs2069502	METTL21B	cis	Adipose Subcutaneous	GTEx
rs2069502	FAM119B	cis	brain	seeQTL
rs2069502	WIBG	cis	cerebellum	SCAN
rs2069502	XRCC6BP1	cis	Thyroid	GTEx
rs2069502	METTL21B	cis	Muscle Skeletal	GTEx
rs2069502	TSPAN31	cis	cerebellum	SCAN
rs2069502	KIAA0748	cis	cerebellum	SCAN
rs2069502	FAM119B	Cis_1M	lymphoblastoid	RTeQTL
rs2069502	FAM119B	cis	brain	BrainEAC
rs2069502	METTL21B	cis	Whole Blood	GTEx
rs2069502	FAM119B	cis	intralobular white matter	BrainEAC
rs2069502	TSFM	cis	lymphoblastoid	seeQTL
rs2069502	GPR84	cis	cerebellum	SCAN
rs2069502	FAM119B	cis	cerebellar cortex	BrainEAC
rs2069502	METTL21B	cis	Heart Left Ventricle	GTEx
rs2069502	DKFZP586D0919	cis	multi-tissue	Pritchard
rs2069502	TSFM	cis	multi-tissue	Pritchard
rs2069502	XRCC6BP1	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58139400-58145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:58139800-58144800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:58139800-58144800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:58139800-58144800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:58140000-58144800	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr12:58140000-58144800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:58140000-58144800	Weak transcription	Stomach Mucosa	stomach
8	chr12:58140200-58144800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:58140200-58144800	Strong transcription	Placenta	Placenta
10	chr12:58140200-58144800	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr12:58140400-58144800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr12:58140400-58145000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:58140400-58145000	Strong transcription	Thymus	Thymus
14	chr12:58140600-58144800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr12:58140800-58144800	Strong transcription	Fetal Kidney	kidney
16	chr12:58141000-58144800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr12:58141800-58144800	Strong transcription	Right Ventricle	heart
18	chr12:58143000-58145000	Weak transcription	Small Intestine	intestine
19	chr12:58143200-58144800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr12:58143200-58145200	Weak transcription	Aorta	Aorta
21	chr12:58143400-58144800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr12:58143400-58144800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr12:58143400-58145200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr12:58143600-58144800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr12:58143600-58144800	Weak transcription	Psoas Muscle	Psoas
26	chr12:58143600-58145000	Genic enhancers	Pancreas	Pancrea
27	chr12:58144000-58144800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
28	chr12:58144000-58144800	Genic enhancers	Fetal Brain Male	brain
29	chr12:58144000-58145400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:58144200-58144800	Genic enhancers	Brain Hippocampus Middle	brain
31	chr12:58144200-58144800	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
32	chr12:58144200-58144800	Genic enhancers	Fetal Intestine Large	intestine
33	chr12:58144200-58144800	Genic enhancers	Fetal Intestine Small	intestine
34	chr12:58144200-58144800	Genic enhancers	Fetal Thymus	thymus
35	chr12:58144200-58145000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr12:58144200-58145000	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr12:58144200-58145000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr12:58144200-58145000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
39	chr12:58144200-58145000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
40	chr12:58144200-58145200	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
41	chr12:58144200-58145200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr12:58144200-58145200	Genic enhancers	Spleen	Spleen
43	chr12:58144400-58144800	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
44	chr12:58144400-58144800	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr12:58144400-58144800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr12:58144400-58144800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr12:58144400-58144800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
48	chr12:58144400-58144800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr12:58144400-58144800	Strong transcription	Esophagus	oesophagus
50	chr12:58144400-58144800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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