Variant report

Variant	rs2070701
Chromosome Location	chr1:160111184-160111185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP1A4-1	chr1:160111084-160111567	NONHSAT007042

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12410866	1.00[JPT][hapmap]
rs16831543	1.00[AFR][1000 genomes]
rs56022217	0.88[ASN][1000 genomes]
rs911229	0.88[ASN][1000 genomes]
rs911230	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327316	chr1:159985477-160151281	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv1794281	chr1:160029416-160111565	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv1820784	chr1:160029416-160159395	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv534165	chr1:160029416-160187302	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv872490	chr1:160083012-160121488	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv3453724	chr1:160098374-160136495	Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	esv3453725	chr1:160098456-160136351	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160088000-160146200	Weak transcription	Spleen	Spleen
2	chr1:160090600-160112600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:160092400-160112200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:160094000-160112000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:160097200-160112200	Weak transcription	Brain Germinal Matrix	brain
6	chr1:160098600-160112200	Strong transcription	Fetal Muscle Trunk	muscle
7	chr1:160100000-160114800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:160100600-160112000	Strong transcription	Fetal Muscle Leg	muscle
9	chr1:160102600-160111800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
10	chr1:160103400-160118000	Weak transcription	Right Atrium	heart
11	chr1:160106600-160114200	Weak transcription	Adipose Nuclei	Adipose
12	chr1:160106800-160121600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:160107000-160111400	Weak transcription	Brain Substantia Nigra	brain
14	chr1:160107000-160112200	Strong transcription	Colon Smooth Muscle	Colon
15	chr1:160107000-160112800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:160107400-160111400	Weak transcription	Ovary	ovary
17	chr1:160107400-160111800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:160107400-160111800	Strong transcription	Left Ventricle	heart
19	chr1:160107400-160114600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:160107600-160111800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:160107600-160121400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:160108000-160111600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:160108600-160112800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:160108600-160113000	Strong transcription	Stomach Smooth Muscle	stomach
25	chr1:160108800-160112200	Strong transcription	HSMMtube	muscle
26	chr1:160109000-160111800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:160109000-160112200	Strong transcription	Aorta	Aorta
28	chr1:160109400-160111800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:160109400-160112000	Strong transcription	Right Ventricle	heart
30	chr1:160109800-160114800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr1:160110200-160111600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
32	chr1:160110200-160113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:160110200-160113400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:160110200-160114800	Weak transcription	Fetal Stomach	stomach
35	chr1:160110400-160111200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:160110400-160114400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr1:160111000-160113400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links