Variant report

Variant	rs2071279
Chromosome Location	chr6:32164874-32164875
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:79)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:79 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:32162379-32165188	IMR90	lung:	n/a	n/a
2	POLR2A	chr6:32162910-32165422	H1-hESC	embryonic stem cell:	n/a	n/a
3	JUN	chr6:32162309-32165228	K562	blood:	n/a	chr6:32164365-32164374 chr6:32164361-32164374
4	POLR2A	chr6:32162959-32165297	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr6:32162968-32164946	HEK293	kidney:	n/a	n/a
6	POLR2A	chr6:32162916-32165090	K562	blood:	n/a	n/a
7	MAZ	chr6:32162543-32165457	IMR90	lung:	n/a	chr6:32164356-32164365
8	CBX3	chr6:32162732-32165118	K562	blood:	n/a	n/a
9	POLR2A	chr6:32162607-32165427	HCT-116	colon:	n/a	n/a
10	POLR2A	chr6:32163123-32164898	MCF-7	breast:	n/a	n/a
11	MXI1	chr6:32162642-32165675	SK-N-SH	brain:	n/a	chr6:32164354-32164369 chr6:32164356-32164371 chr6:32164324-32164339
12	POLR2A	chr6:32162571-32165463	GM12892	blood:	n/a	n/a
13	CREB1	chr6:32162812-32164896	GM12878	blood:	n/a	chr6:32164363-32164376
14	REST	chr6:32162407-32165158	H1-neurons	neurons:	n/a	n/a
15	POLR2A	chr6:32162052-32165490	GM12878	blood:	n/a	n/a
16	POLR2A	chr6:32162614-32165401	GM12892	blood:	n/a	n/a
17	POLR2A	chr6:32161866-32165589	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr6:32163035-32165015	Hela-S3	cervix:	n/a	n/a
19	CREB1	chr6:32162771-32164921	GM12878	blood:	n/a	chr6:32164363-32164376
20	POLR2A	chr6:32162640-32165023	HCT-116	colon:	n/a	n/a
21	EP300	chr6:32162756-32164974	K562	blood:	n/a	n/a
22	POLR2A	chr6:32162488-32165073	HUVEC	blood vessel:	n/a	n/a
23	MTA3	chr6:32163581-32165619	GM12878	blood:	n/a	n/a
24	POLR2A	chr6:32162725-32165522	K562	blood:	n/a	n/a
25	RCOR1	chr6:32162571-32165013	K562	blood:	n/a	n/a
26	JUND	chr6:32162391-32165649	SK-N-SH	brain:	n/a	chr6:32164365-32164374
27	ZMIZ1	chr6:32162856-32164966	K562	blood:	n/a	n/a
28	POLR2A	chr6:32162650-32164990	K562	blood:	n/a	n/a
29	TBP	chr6:32162880-32164929	K562	blood:	n/a	n/a
30	RUNX3	chr6:32162808-32164974	GM12878	blood:	n/a	chr6:32164581-32164598
31	POLR2A	chr6:32162582-32165497	PANC-1	pancreas:	n/a	n/a
32	POLR2A	chr6:32162200-32165362	SK-N-MC	brain:	n/a	n/a
33	POLR2A	chr6:32162616-32165296	K562	blood:	n/a	n/a
34	TRIM28	chr6:32163192-32164890	K562	blood:	n/a	n/a
35	NFATC1	chr6:32163618-32164945	GM12878	blood:	n/a	n/a
36	NR2F2	chr6:32162658-32165159	K562	blood:	n/a	n/a
37	POLR2A	chr6:32162700-32164913	MCF10A-Er-Src	breast:	n/a	n/a
38	POLR2A	chr6:32162873-32165469	K562	blood:	n/a	n/a
39	POLR2A	chr6:32162191-32164979	HUVEC	blood vessel:	n/a	n/a
40	POLR2A	chr6:32162614-32165491	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr6:32162621-32165104	GM12878	blood:	n/a	n/a
42	TEAD4	chr6:32162748-32164968	K562	blood:	n/a	n/a
43	POLR2A	chr6:32162557-32164987	HUVEC	blood vessel:	n/a	n/a
44	POLR2A	chr6:32162292-32165510	K562	blood:	n/a	n/a
45	POLR2A	chr6:32161310-32165505	HUVEC	blood vessel:	n/a	n/a
46	POLR2A	chr6:32163110-32164992	H1-hESC	embryonic stem cell:	n/a	n/a
47	TBL1XR1	chr6:32162892-32165067	K562	blood:	n/a	n/a
48	POLR2A	chr6:32162641-32165180	SK-N-SH	brain:	n/a	n/a
49	MAX	chr6:32162802-32164964	K562	blood:	n/a	chr6:32164356-32164365
50	POLR2A	chr6:32162727-32164878	K562	blood:	n/a	n/a

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32163789..32165690-chr6:32935200..32936747,2	K562	blood:
2	chr6:31865326..31867816-chr6:32162690..32165281,2	K562	blood:
3	chr6:32161088..32165326-chr6:32169271..32173030,5	MCF-7	breast:
4	chr6:32094074..32100900-chr6:32161398..32167888,13	K562	blood:
5	chr6:32093849..32103011-chr6:32158588..32167888,20	K562	blood:
6	chr6:31782025..31784864-chr6:32163977..32165547,2	K562	blood:
7	chr6:32163481..32169034-chr6:32169524..32172955,12	K562	blood:
8	chr6:32092056..32098268-chr6:32161262..32166055,9	MCF-7	breast:
9	chr6:32120233..32126271-chr6:32158822..32166984,18	K562	blood:
10	chr6:32142678..32147635-chr6:32160639..32166698,10	MCF-7	breast:
11	chr6:31939699..31941257-chr6:32163726..32165365,2	K562	blood:
12	chr17:58602704..58604346-chr6:32162970..32164898,2	MCF-7	breast:
13	chr6:32162500..32165238-chr6:33216220..33218069,2	K562	blood:
14	chr6:32120281..32121979-chr6:32162603..32165254,2	MCF-7	breast:
15	chr6:32160494..32165534-chr6:32936226..32940511,8	MCF-7	breast:
16	chr6:32161974..32166244-chr6:32939373..32941563,3	K562	blood:
17	chr6:32133333..32138602-chr6:32161544..32165617,8	K562	blood:
18	chr6:32085765..32088345-chr6:32164285..32168235,3	K562	blood:
19	chr6:32094644..32097933-chr6:32160950..32166107,5	MCF-7	breast:

No data

Variant related genes	Relation type
NOTCH4	TF binding region
GPSM3	TF binding region
ENSG00000204344	Chromatin interaction
ENSG00000232940	Chromatin interaction
ENSG00000204308	Chromatin interaction
ENSG00000258388	Chromatin interaction
ENSG00000062725	Chromatin interaction
ENSG00000204301	Chromatin interaction
ENSG00000204389	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000241404	Chromatin interaction
ENSG00000263756	Chromatin interaction
ENSG00000259349	Chromatin interaction
ENSG00000213676	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000221988	Chromatin interaction
ENSG00000204310	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000204257	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2071286	0.87[ASN][1000 genomes]
rs3131290	0.80[ASN][1000 genomes]
rs3134932	0.80[ASN][1000 genomes]
rs9267820	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9267821	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9267823	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9267830	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9267831	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9267832	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9267833	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv462877	chr6:32151443-32177900	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
37	nsv602105	chr6:32151443-32177900	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
38	nsv884708	chr6:32154998-32172366	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
39	nsv884709	chr6:32155581-32166380	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
40	nsv884710	chr6:32155581-32168595	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
41	nsv884711	chr6:32155581-32171683	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
42	nsv884713	chr6:32157364-32166380	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	47 gene(s)	inside rSNPs	diseases
43	nsv884714	chr6:32157364-32168595	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	47 gene(s)	inside rSNPs	diseases
44	nsv884715	chr6:32160764-32168595	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2071279	HLA-DRB5	cis	cerebellum	SCAN
rs2071279	SRPK1	cis	parietal	SCAN
rs2071279	ZMYM6	trans	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32162800-32165000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:32163000-32165000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr6:32163000-32165000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:32163200-32165000	Active TSS	HSMMtube	muscle
5	chr6:32163400-32165000	Active TSS	Primary T helper naive cells from peripheral blood	blood
6	chr6:32163600-32165400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:32163800-32165000	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr6:32163800-32165000	Flanking Active TSS	Colonic Mucosa	Colon
9	chr6:32163800-32165000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr6:32163800-32165200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:32163800-32165200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:32163800-32165200	Flanking Active TSS	Fetal Muscle Trunk	muscle
13	chr6:32163800-32165200	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr6:32163800-32165400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr6:32164000-32165000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:32164000-32165000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr6:32164000-32165000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:32164000-32165000	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr6:32164000-32165000	Flanking Active TSS	Fetal Muscle Leg	muscle
20	chr6:32164000-32165000	Flanking Active TSS	Hela-S3	cervix
21	chr6:32164000-32165400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr6:32164000-32165400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr6:32164200-32165000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:32164200-32165000	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr6:32164200-32165000	Flanking Active TSS	Esophagus	oesophagus
26	chr6:32164200-32165000	Flanking Active TSS	Osteobl	bone
27	chr6:32164200-32165400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr6:32164400-32165000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr6:32164400-32165000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:32164400-32165000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:32164400-32165000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr6:32164400-32165000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr6:32164400-32165000	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr6:32164400-32165000	Flanking Active TSS	GM12878-XiMat	blood
35	chr6:32164400-32165200	Flanking Active TSS	Fetal Intestine Large	intestine
36	chr6:32164400-32165200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr6:32164400-32165200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr6:32164400-32165200	Flanking Active TSS	NH-A	brain
39	chr6:32164400-32165400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:32164400-32165400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:32164400-32165600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:32164400-32165600	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr6:32164400-32165600	Flanking Active TSS	K562	blood
44	chr6:32164600-32165000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr6:32164600-32165000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
46	chr6:32164600-32165000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:32164600-32165000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:32164600-32165000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr6:32164600-32165000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr6:32164600-32165000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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