Variant report

Variant	rs2071863
Chromosome Location	chr6:36107172-36107173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36106553..36107874-chr6:36163746..36164722,11	MCF-7	breast:
2	chr6:36106801..36107783-chr6:36270348..36270934,3	MCF-7	breast:
3	chr6:36107153..36107802-chr6:36328172..36328804,2	MCF-7	breast:
4	chr6:36106951..36107870-chr6:36163781..36164623,2	K562	blood:
5	chr6:36106919..36107852-chr6:36269916..36270840,3	K562	blood:
6	chr6:36105269..36110195-chr6:36162724..36166768,9	MCF-7	breast:
7	chr6:36107028..36107663-chr6:36213372..36213954,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246982	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2815807	0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2071863	MAPK14	cis	cerebellum	SCAN
rs2071863	PI16	cis	parietal	SCAN
rs2071863	PI16	cis	cerebellum	SCAN

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36099200-36117400	Weak transcription	Psoas Muscle	Psoas
2	chr6:36099800-36107400	Weak transcription	Fetal Brain Male	brain
3	chr6:36099800-36107400	Weak transcription	Fetal Brain Female	brain
4	chr6:36099800-36107600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:36099800-36113400	Weak transcription	Right Atrium	heart
6	chr6:36100000-36109600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:36100200-36108200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:36100200-36111000	Weak transcription	Adipose Nuclei	Adipose
9	chr6:36100200-36111000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:36100200-36115000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:36100400-36107600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:36100400-36107600	Weak transcription	Brain Angular Gyrus	brain
13	chr6:36100400-36107800	Weak transcription	Liver	Liver
14	chr6:36100400-36109400	Weak transcription	Osteobl	bone
15	chr6:36100400-36117400	Weak transcription	Fetal Lung	lung
16	chr6:36100400-36118600	Weak transcription	Small Intestine	intestine
17	chr6:36100600-36108000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:36100600-36108800	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:36100600-36110000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:36100800-36107400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:36100800-36108000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:36100800-36108200	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr6:36100800-36114600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:36101000-36107600	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:36101000-36108800	Strong transcription	Fetal Stomach	stomach
26	chr6:36101000-36109000	Weak transcription	Stomach Mucosa	stomach
27	chr6:36101200-36107400	Strong transcription	Primary T cells from cord blood	blood
28	chr6:36101200-36108400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:36101200-36109000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:36101200-36129400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:36101400-36107400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:36101400-36108200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:36101400-36109000	Strong transcription	Duodenum Mucosa	Duodenum
34	chr6:36101400-36114600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:36101800-36107400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:36101800-36107400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:36101800-36107400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:36101800-36108000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:36102000-36107800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:36102000-36108400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:36102000-36110200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:36102800-36107400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:36103000-36108200	Strong transcription	Esophagus	oesophagus
44	chr6:36103000-36108400	Strong transcription	Pancreas	Pancrea
45	chr6:36103000-36108600	Strong transcription	Placenta	Placenta
46	chr6:36103200-36107600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:36103200-36108400	Strong transcription	Lung	lung
48	chr6:36103400-36107400	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:36103400-36107600	Strong transcription	Thymus	Thymus
50	chr6:36103400-36108200	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links