Variant report

Variant	rs2072645
Chromosome Location	chr6:167190585-167190586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:167187491..167191588-chr6:167191761..167196442,4	K562	blood:
2	chr6:167189817..167191865-chr6:167369801..167372090,2	K562	blood:
3	chr6:167173631..167176313-chr6:167188907..167191189,2	K562	blood:

Variant related genes	Relation type
ENSG00000026297	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10484520	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11966369	0.89[AFR][1000 genomes]
rs11966385	0.89[AFR][1000 genomes]
rs11967556	0.84[AFR][1000 genomes]
rs11967610	0.89[AFR][1000 genomes]
rs11968045	0.89[AFR][1000 genomes]
rs11968120	0.89[AFR][1000 genomes]
rs11968816	0.89[AFR][1000 genomes]
rs11969512	0.89[AFR][1000 genomes]
rs12660931	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16899454	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16899459	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16899466	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16899513	0.91[AMR][1000 genomes]
rs2072642	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2072643	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2072644	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2072646	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2182853	0.91[AMR][1000 genomes]
rs2242574	0.83[AMR][1000 genomes]
rs4710098	0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4710099	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4710101	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4710103	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4710104	0.83[ASN][1000 genomes]
rs4710105	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4710114	0.83[AMR][1000 genomes]
rs61194672	0.91[AMR][1000 genomes]
rs7753295	0.89[AFR][1000 genomes]
rs845649	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv605326	chr6:167182277-167196032	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv605327	chr6:167185674-167360389	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167182200-167218600	Weak transcription	Right Atrium	heart
2	chr6:167188800-167190800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:167189400-167190600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:167189400-167192200	Weak transcription	Fetal Brain Male	brain
5	chr6:167189600-167193200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:167190400-167195200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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