Variant report

Variant	rs2072822
Chromosome Location	chr6:15517659-15517660
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15516906..15518495-chr6:15623868..15625701,2	K562	blood:
2	chr6:15515085..15518660-chr6:15518767..15521889,3	K562	blood:
3	chr6:15515425..15518406-chr6:16131568..16133086,2	K562	blood:
4	chr6:15516906..15518572-chr6:15624201..15626502,2	K562	blood:
5	chr6:15513408..15516552-chr6:15517527..15519926,3	MCF-7	breast:
6	chr6:15515058..15517945-chr6:15613848..15616307,2	K562	blood:
7	chr6:15515754..15518660-chr6:15518767..15520482,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1967663	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2072821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237113	0.83[CHB][hapmap]
rs2237116	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2237120	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs2237123	0.83[CHB][hapmap]
rs2237124	0.82[CHB][hapmap]
rs2237139	0.87[CEU][hapmap]
rs2282819	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2299045	0.86[CHB][hapmap]
rs2299059	0.86[CEU][hapmap]
rs3800496	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4085876	0.81[CHB][hapmap]
rs9396588	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs9396589	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9396590	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396591	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv522265	chr6:15494177-15546213	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15492200-15527000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:15492400-15527200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:15492600-15522200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:15492800-15527000	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:15493800-15520000	Weak transcription	Hela-S3	cervix
6	chr6:15494200-15522400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr6:15494800-15524000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:15494800-15527000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr6:15495000-15527200	Strong transcription	Dnd41	blood
10	chr6:15495000-15529200	Strong transcription	Primary T cells from cord blood	blood
11	chr6:15495200-15525800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:15495400-15525000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:15496000-15525200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:15496000-15525600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:15496000-15526600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:15496000-15528400	Strong transcription	Primary B cells from cord blood	blood
17	chr6:15497400-15526600	Strong transcription	Fetal Intestine Large	intestine
18	chr6:15498400-15522600	Strong transcription	Primary hematopoietic stem cells	blood
19	chr6:15500600-15524600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:15502400-15522400	Weak transcription	A549	lung
21	chr6:15502800-15521400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:15505200-15521600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:15505800-15518800	Strong transcription	Colonic Mucosa	Colon
24	chr6:15506000-15522000	Weak transcription	Stomach Mucosa	stomach
25	chr6:15506000-15523600	Strong transcription	NHEK	skin
26	chr6:15506000-15527000	Strong transcription	Fetal Intestine Small	intestine
27	chr6:15506200-15522400	Strong transcription	GM12878-XiMat	blood
28	chr6:15506200-15523000	Weak transcription	HUVEC	blood vessel
29	chr6:15506600-15523800	Weak transcription	Fetal Brain Male	brain
30	chr6:15506600-15527400	Strong transcription	Duodenum Mucosa	Duodenum
31	chr6:15506800-15525000	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr6:15507000-15533200	Weak transcription	HSMM	muscle
33	chr6:15507200-15522000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr6:15507400-15522800	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr6:15507400-15524400	Strong transcription	Fetal Stomach	stomach
36	chr6:15507400-15524800	Strong transcription	Fetal Lung	lung
37	chr6:15507400-15529400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:15508600-15520600	Strong transcription	Pancreas	Pancrea
39	chr6:15508800-15520800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:15508800-15522200	Strong transcription	Placenta	Placenta
41	chr6:15508800-15523600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:15509000-15524600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:15509000-15525800	Weak transcription	Fetal Kidney	kidney
44	chr6:15509200-15519800	Weak transcription	NH-A	brain
45	chr6:15509200-15522000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
46	chr6:15509200-15524000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:15509200-15524200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:15509200-15524600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:15509200-15525000	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:15509200-15527200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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