Variant report

Variant	rs2074295
Chromosome Location	chr19:19369435-19369436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10403273	0.87[AFR][1000 genomes]
rs10422893	0.94[AFR][1000 genomes]
rs4808934	0.93[AFR][1000 genomes]
rs7257875	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv911306	chr19:19366643-19391838	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3355822	chr19:19367577-19370125	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2074295	SF4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19361600-19372200	Weak transcription	Brain Angular Gyrus	brain
2	chr19:19363400-19371600	Weak transcription	Brain Germinal Matrix	brain
3	chr19:19367000-19370400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr19:19367600-19370000	Strong transcription	Fetal Stomach	stomach
5	chr19:19367600-19370600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr19:19367600-19371600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:19367600-19371600	Weak transcription	Fetal Brain Female	brain
8	chr19:19367800-19370800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr19:19367800-19371600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:19367800-19371800	Weak transcription	Fetal Brain Male	brain
11	chr19:19368200-19369600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr19:19368200-19371600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr19:19368400-19370400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr19:19368400-19371600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr19:19368800-19369600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:19368800-19370400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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