Variant report

Variant rs2074540
Chromosome Location chr12:120636549-120636550
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:120633000-120637200 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr12:120633000-120637800 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
3 chr12:120633200-120638400 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr12:120633400-120636800 Strong transcription Fetal Stomach stomach
5 chr12:120633400-120637200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
6 chr12:120633400-120637600 Genic enhancers Liver Liver
7 chr12:120633600-120637000 Genic enhancers Fetal Thymus thymus
8 chr12:120633600-120638000 Transcr. at gene 5' and 3' GM12878-XiMat blood
9 chr12:120633600-120638200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr12:120633800-120636600 Strong transcription Colonic Mucosa Colon
11 chr12:120633800-120636800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr12:120633800-120636800 Strong transcription Brain Anterior Caudate brain
13 chr12:120633800-120636800 Strong transcription Brain Hippocampus Middle brain
14 chr12:120633800-120636800 Strong transcription Fetal Intestine Large intestine
15 chr12:120633800-120637200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
16 chr12:120633800-120637400 Strong transcription Fetal Kidney kidney
17 chr12:120633800-120637600 Genic enhancers Placenta Placenta
18 chr12:120633800-120638600 Transcr. at gene 5' and 3' K562 blood
19 chr12:120634000-120636600 Strong transcription Right Ventricle heart
20 chr12:120634000-120636800 Strong transcription Brain Cingulate Gyrus brain
21 chr12:120634000-120636800 Strong transcription Brain Substantia Nigra brain
22 chr12:120634000-120636800 Strong transcription Colon Smooth Muscle Colon
23 chr12:120634000-120636800 Genic enhancers Skeletal Muscle Female skeletal muscle
24 chr12:120634000-120636800 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr12:120634000-120637000 Strong transcription Brain Inferior Temporal Lobe brain
26 chr12:120634000-120637000 Strong transcription Placenta Amnion Placenta Amnion
27 chr12:120634000-120637000 Strong transcription Rectal Smooth Muscle rectum
28 chr12:120634000-120637200 Strong transcription ES-I3 Cell Line embryonic stem cell
29 chr12:120634000-120637200 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr12:120634000-120637400 Strong transcription Primary monocytes fromperipheralblood blood
31 chr12:120634000-120637600 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr12:120634200-120636600 Genic enhancers HSMM muscle
33 chr12:120634200-120636800 Strong transcription Primary T regulatory cells fromperipheralblood blood
34 chr12:120634200-120636800 Strong transcription Sigmoid Colon Sigmoid Colon
35 chr12:120634200-120637400 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
36 chr12:120634200-120637400 Strong transcription Ovary ovary
37 chr12:120634400-120636600 Strong transcription Primary neutrophils fromperipheralblood blood
38 chr12:120634400-120637800 Transcr. at gene 5' and 3' Hela-S3 cervix
39 chr12:120634600-120637000 Strong transcription Aorta Aorta
40 chr12:120634600-120637400 Strong transcription Esophagus oesophagus
41 chr12:120634600-120637600 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr12:120634800-120636800 Strong transcription Brain Angular Gyrus brain
43 chr12:120634800-120636800 Genic enhancers Duodenum Smooth Muscle Duodenum
44 chr12:120634800-120637200 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
45 chr12:120634800-120637600 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr12:120634800-120637600 Genic enhancers Cortex derived primary cultured neurospheres brain
47 chr12:120634800-120638600 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
48 chr12:120634800-120638600 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
49 chr12:120634800-120638800 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
50 chr12:120635000-120637000 Strong transcription Pancreatic Islets Pancreatic Islet

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