Variant report

Variant	rs207463566
Chromosome Location	chr3:115717330-115717331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv829685	chr3:115643521-115812913	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3444457	chr3:115715862-115717810	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115709600-115718000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:115709600-115718000	Weak transcription	HSMM	muscle
3	chr3:115709800-115717800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:115710000-115717800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:115710800-115718000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:115713400-115717400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:115716000-115717600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:115716000-115717800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:115716000-115718400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:115716200-115718000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:115716200-115718400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:115716400-115718000	Weak transcription	NH-A	brain
13	chr3:115716400-115718200	Weak transcription	Osteobl	bone
14	chr3:115717000-115717600	Enhancers	Brain Hippocampus Middle	brain
15	chr3:115717000-115718800	Enhancers	Brain Angular Gyrus	brain
16	chr3:115717200-115717600	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:115717200-115719000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:115717200-115719600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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