Variant report

Variant	rs2074886
Chromosome Location	chr15:92689695-92689696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92682991..92685535-chr15:92689557..92692167,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12592574	0.85[EUR][1000 genomes]
rs2190748	0.83[CHB][hapmap]
rs2238351	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238352	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2238354	0.83[CHB][hapmap]
rs2238356	0.86[CHB][hapmap]
rs2238357	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2283459	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2387685	0.82[CHB][hapmap]
rs55956389	0.97[EUR][1000 genomes]
rs7175217	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs732546	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs740432	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs758136	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8035166	0.81[JPT][hapmap]
rs886914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:92648200-92692600	Weak transcription	NHLF	lung
3	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
6	chr15:92664000-92707000	Weak transcription	Liver	Liver
7	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
8	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:92668200-92690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:92668600-92690800	Weak transcription	Brain Angular Gyrus	brain
11	chr15:92669600-92703000	Weak transcription	Brain Anterior Caudate	brain
12	chr15:92671600-92708000	Weak transcription	Gastric	stomach
13	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
14	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:92672000-92704200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:92672200-92695600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:92672200-92703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:92672600-92690200	Weak transcription	Spleen	Spleen
19	chr15:92672600-92691200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:92673400-92692600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:92674000-92690000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:92674800-92707800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:92676600-92689800	Weak transcription	Primary T cells from cord blood	blood
24	chr15:92676800-92690200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:92678600-92692400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:92678600-92701000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:92679200-92698800	Weak transcription	Thymus	Thymus
28	chr15:92679400-92690200	Weak transcription	Ovary	ovary
29	chr15:92679600-92690200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:92683800-92690200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:92684200-92701400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr15:92684600-92701000	Weak transcription	NHEK	skin
35	chr15:92684800-92690200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:92684800-92701400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:92685200-92691600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:92685200-92701000	Weak transcription	HMEC	breast
39	chr15:92686000-92692400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:92686000-92703200	Weak transcription	Right Atrium	heart
41	chr15:92686200-92690000	Enhancers	Fetal Heart	heart
42	chr15:92686200-92690600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:92686400-92690200	Weak transcription	Brain Substantia Nigra	brain
44	chr15:92686400-92692200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr15:92686400-92706800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:92686800-92707600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr15:92687200-92690200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:92687400-92690000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr15:92687400-92705000	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:92687600-92701000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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