Variant report

Variant	rs2076034
Chromosome Location	chr22:32740044-32740045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr22:32740013-32740270	HepG2	liver:	n/a	chr22:32740162-32740170 chr22:32740160-32740172
2	ESRRA	chr22:32738635-32740464	GM12878	blood:	n/a	chr22:32740196-32740209

Variant related genes	Relation type
ENSG00000234626	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs12160986	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs16987625	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs16990228	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16990262	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2076036	0.86[CHB][hapmap]
rs2076040	0.82[CHD][hapmap];0.85[MEX][hapmap]
rs2413108	0.87[CHB][hapmap]
rs2899185	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4343557	0.87[CHB][hapmap]
rs55844652	0.94[ASN][1000 genomes]
rs56188006	0.95[ASN][1000 genomes]
rs5749404	0.95[ASN][1000 genomes]
rs5749405	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5749407	0.87[CHB][hapmap]
rs5749409	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs5749412	0.95[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap]
rs5749413	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs5753985	0.95[ASN][1000 genomes]
rs5753986	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753990	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5753991	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5753992	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5753994	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs5753995	0.86[ASN][1000 genomes]
rs5754000	0.83[ASN][1000 genomes]
rs5754001	0.81[ASN][1000 genomes]
rs5754003	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs5754005	0.81[ASN][1000 genomes]
rs5754008	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs5754009	0.83[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs5754010	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs5754018	0.83[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs5754020	0.90[CHB][hapmap]
rs5754027	0.95[CHB][hapmap]
rs5754029	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs5754030	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs5754035	0.83[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs5754036	0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap]
rs5754037	0.95[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs5754039	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs5754040	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs5754042	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs5754043	0.95[CHB][hapmap]
rs5754044	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs5754045	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs5754049	0.95[CHB][hapmap]
rs5754050	0.81[CHB][hapmap]
rs5998425	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5998434	0.81[ASN][1000 genomes]
rs5998440	0.91[CHB][hapmap]
rs5998451	0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap]
rs5998456	1.00[CHB][hapmap]
rs5998457	0.81[JPT][hapmap]
rs5998459	0.81[JPT][hapmap]
rs5998463	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs61693297	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62239307	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62239312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72617300	0.81[ASN][1000 genomes]
rs72617301	0.81[ASN][1000 genomes]
rs72617302	0.81[ASN][1000 genomes]
rs72620403	0.81[ASN][1000 genomes]
rs72620407	0.80[ASN][1000 genomes]
rs72620408	0.80[ASN][1000 genomes]
rs7285471	0.98[EUR][1000 genomes]
rs7287174	0.94[ASN][1000 genomes]
rs7290125	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7292007	0.94[ASN][1000 genomes]
rs732884	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs738267	0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948789	chr22:32462505-32764760	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1065175	chr22:32467617-32761093	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv544680	chr22:32467617-32761093	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv2830423	chr22:32477718-32767825	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv2422247	chr22:32486448-32788258	Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
7	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
8	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32736400-32741800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr22:32736800-32744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:32738000-32741800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:32739000-32740200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:32739600-32742400	Enhancers	HUVEC	blood vessel

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