Variant report

Variant	rs2076647
Chromosome Location	chr20:11216253-11216254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1473700	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1473701	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1473702	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1473703	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2015108	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2076643	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2076644	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2076645	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2076646	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2143857	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2143859	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2179827	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207098	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2207099	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2207100	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2223858	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2327366	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2327368	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2876220	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2876221	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35609472	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4384859	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4435520	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4449208	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4632419	0.89[ASN][1000 genomes]
rs4643605	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4813966	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813967	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813968	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4813969	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4813970	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4813971	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4813972	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6033062	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6033063	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033066	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6033067	0.84[ASN][1000 genomes]
rs6033068	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6033069	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6033070	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6033071	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6033072	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6040435	0.89[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6040436	0.89[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6040442	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040446	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6040447	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6040450	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040451	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040452	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040456	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040458	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040459	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040460	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040461	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040463	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040464	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040465	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040466	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040469	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6040470	0.88[ASN][1000 genomes]
rs6040471	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6040472	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6040473	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6040474	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6040475	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6040477	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6040479	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6040480	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6040481	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6040482	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6040486	0.84[EUR][1000 genomes]
rs6040487	0.80[EUR][1000 genomes]
rs6040489	0.84[EUR][1000 genomes]
rs6040490	0.82[EUR][1000 genomes]
rs6078105	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6078109	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6104726	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6108870	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108871	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108872	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6108876	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6108882	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs714690	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs714691	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs714692	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs761471	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs761472	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926725	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983251	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs983252	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs983342	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs983343	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11207600-11216400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr20:11211000-11218600	Weak transcription	HSMMtube	muscle
3	chr20:11213200-11216600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr20:11214400-11216800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr20:11214600-11216400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:11214600-11216600	Enhancers	HUVEC	blood vessel
7	chr20:11214600-11217400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr20:11214800-11216400	Enhancers	HMEC	breast
9	chr20:11214800-11216600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr20:11214800-11216600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:11214800-11216600	Enhancers	NH-A	brain
12	chr20:11215200-11216400	Enhancers	NHEK	skin
13	chr20:11215200-11216600	Enhancers	Fetal Kidney	kidney
14	chr20:11215200-11216600	Enhancers	Osteobl	bone
15	chr20:11215400-11216400	Enhancers	HSMM	muscle
16	chr20:11215400-11216600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr20:11215600-11216400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr20:11215800-11216400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:11215800-11216400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr20:11215800-11216400	Enhancers	Fetal Muscle Leg	muscle
21	chr20:11216200-11228400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr20:11216200-11238800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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