Variant report

Variant	rs2077550
Chromosome Location	chr9:139736457-139736458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:139735601-139737393	A549	lung:	n/a	n/a
2	POLR2A	chr9:139732111-139737313	HepG2	liver:	n/a	n/a
3	CTCF	chr9:139736400-139736550	NHLF	lung:	n/a	n/a
4	POLR2A	chr9:139734806-139737607	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr9:139735604-139737402	GM12891	blood:	n/a	n/a
6	POLR2A	chr9:139736015-139736657	HUVEC	blood vessel:	n/a	n/a
7	FOSL2	chr9:139734910-139737445	HepG2	liver:	n/a	n/a
8	TCF12	chr9:139735547-139737271	A549	lung:	n/a	n/a
9	POLR2A	chr9:139736088-139736566	GM12892	blood:	n/a	n/a
10	POLR2A	chr9:139727976-139737276	K562	blood:	n/a	n/a
11	POLR2A	chr9:139734971-139737433	HepG2	liver:	n/a	n/a
12	MBD4	chr9:139735529-139736464	HepG2	liver:	n/a	n/a
13	POLR2A	chr9:139735540-139736607	GM12892	blood:	n/a	n/a
14	POLR2A	chr9:139725803-139737372	Hela-S3	cervix:	n/a	n/a
15	NFATC1	chr9:139736117-139736457	GM12878	blood:	n/a	n/a
16	POLR2A	chr9:139731450-139737397	K562	blood:	n/a	n/a
17	CEBPD	chr9:139735413-139736669	HepG2	liver:	n/a	n/a
18	USF1	chr9:139736153-139736585	A549	lung:	n/a	chr9:139736395-139736406 chr9:139736395-139736408 chr9:139736396-139736405
19	BCL3	chr9:139735204-139736495	K562	blood:	n/a	chr9:139735667-139735680 chr9:139735673-139735686
20	POLR2A	chr9:139735310-139737277	A549	lung:	n/a	n/a
21	CTCF	chr9:139736340-139736490	GM12873	blood:	n/a	n/a
22	USF2	chr9:139735979-139736499	Hela-S3	cervix:	n/a	chr9:139736395-139736406 chr9:139736395-139736408 chr9:139736396-139736405
23	BCL3	chr9:139735559-139737248	A549	lung:	n/a	chr9:139735667-139735680 chr9:139737127-139737140 chr9:139735673-139735686
24	USF1	chr9:139736138-139736638	H1-hESC	embryonic stem cell:	n/a	chr9:139736395-139736406 chr9:139736395-139736408 chr9:139736396-139736405 chr9:139736588-139736604
25	USF1	chr9:139736179-139736620	ECC-1	luminal epithelium:	n/a	chr9:139736395-139736406 chr9:139736395-139736408 chr9:139736396-139736405 chr9:139736588-139736604
26	POLR2A	chr9:139729409-139738494	HepG2	liver:	n/a	n/a
27	POLR2A	chr9:139734729-139737442	PFSK-1	brain:	n/a	n/a
28	POLR2A	chr9:139734760-139737438	HepG2	liver:	n/a	n/a
29	POLR2A	chr9:139734597-139737311	ECC-1	luminal epithelium:	n/a	n/a
30	POLR2A	chr9:139734660-139737344	MCF-7	breast:	n/a	n/a
31	USF1	chr9:139736225-139736601	SK-N-SH_RA	brain:	n/a	chr9:139736395-139736406 chr9:139736395-139736408 chr9:139736396-139736405
32	USF2	chr9:139736296-139736502	H1-hESC	embryonic stem cell:	n/a	chr9:139736395-139736406 chr9:139736395-139736408 chr9:139736396-139736405
33	MAX	chr9:139735652-139736515	A549	lung:	n/a	chr9:139735950-139735959
34	POLR2A	chr9:139735637-139736481	K562	blood:	n/a	n/a
35	POLR2A	chr9:139734752-139738013	GM12878	blood:	n/a	n/a
36	POLR2A	chr9:139735585-139736561	SK-N-MC	brain:	n/a	n/a
37	USF1	chr9:139736256-139736552	A549	lung:	n/a	chr9:139736395-139736406 chr9:139736395-139736408 chr9:139736396-139736405
38	CHD2	chr9:139735573-139736506	Hela-S3	cervix:	n/a	n/a
39	POLR2A	chr9:139731938-139737831	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr9:139732418-139737439	HepG2	liver:	n/a	n/a
41	JUND	chr9:139736243-139736507	HepG2	liver:	n/a	n/a
42	POLR2A	chr9:139734562-139737452	PANC-1	pancreas:	n/a	n/a
43	USF1	chr9:139736232-139736515	HepG2	liver:	n/a	chr9:139736395-139736406 chr9:139736395-139736408 chr9:139736396-139736405
44	POLR2A	chr9:139736259-139737419	A549	lung:	n/a	n/a
45	CTCF	chr9:139736420-139736570	GM12871	blood:	n/a	n/a
46	POLR2A	chr9:139736000-139737255	HUVEC	blood vessel:	n/a	n/a
47	POLR2A	chr9:139736138-139736649	HUVEC	blood vessel:	n/a	n/a
48	POLR2A	chr9:139735357-139737431	HUVEC	blood vessel:	n/a	n/a
49	BHLHE40	chr9:139735746-139737125	HepG2	liver:	n/a	chr9:139736395-139736408 chr9:139736396-139736405 chr9:139736588-139736604
50	POLR2A	chr9:139735925-139736527	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139734155..139746957-chr9:139834710..139842618,30	MCF-7	breast:
2	chr9:139735812..139738462-chr9:139775721..139777258,2	MCF-7	breast:
3	chr9:139735493..139737881-chr9:139795541..139798423,3	MCF-7	breast:
4	chr9:139700738..139704874-chr9:139731904..139736560,7	MCF-7	breast:
5	chr9:139736164..139738277-chr9:139795982..139798065,2	MCF-7	breast:
6	chr9:139681221..139684679-chr9:139733731..139738614,5	K562	blood:
7	chr9:139622309..139624438-chr9:139734315..139736944,2	MCF-7	breast:
8	chr9:139714465..139717265-chr9:139734379..139736854,2	K562	blood:
9	chr9:139735979..139738283-chr9:139780489..139782463,2	K562	blood:
10	chr9:139734054..139737391-chr9:139838773..139841735,3	K562	blood:
11	chr9:139734372..139737105-chr9:139870242..139873600,3	K562	blood:
12	chr9:139718726..139721249-chr9:139732622..139736493,3	K562	blood:
13	chr9:139679045..139680711-chr9:139735459..139738050,2	MCF-7	breast:
14	chr9:139735444..139738045-chr9:139916095..139917945,2	MCF-7	breast:
15	chr9:139680143..139683670-chr9:139733731..139736557,4	K562	blood:
16	chr9:139699764..139703244-chr9:139733014..139736951,4	K562	blood:
17	chr9:139734289..139738346-chr9:139834240..139837376,4	MCF-7	breast:
18	chr9:139702148..139707988-chr9:139735060..139739597,7	K562	blood:
19	chr9:139682195..139706361-chr9:139728316..139752024,110	MCF-7	breast:
20	chr9:139733014..139736841-chr9:139838773..139840880,3	K562	blood:
21	chr9:139696851..139699784-chr9:139735415..139736982,2	K562	blood:
22	chr9:139621188..139622806-chr9:139735895..139737890,2	K562	blood:
23	chr9:139692835..139695036-chr9:139735254..139738901,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf86-1	chr9:139736279-139736680	XLOC_007617

Variant related genes	Relation type
C9orf172	TF binding region
ENSG00000228544	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000266507	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000107317	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000273066	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000272896	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10123375	0.83[ASN][1000 genomes]
rs10870132	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2077581	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7869864	0.85[ASN][1000 genomes]
rs872463	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:67 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
4	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
5	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
6	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
7	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
8	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
9	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
10	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
11	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
12	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
13	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
14	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
15	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
16	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
17	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
18	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
19	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
20	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
21	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
22	nsv894450	chr9:139598108-139776400	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
23	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
24	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
25	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
26	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
27	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
28	nsv894457	chr9:139650448-139776400	Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
29	nsv894458	chr9:139683224-139776400	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
30	nsv894459	chr9:139683224-139787453	Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
31	nsv894460	chr9:139683224-139810595	Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
32	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
33	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
34	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
35	esv29973	chr9:139690144-139754110	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
36	nsv894464	chr9:139690144-139776400	Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
37	nsv894465	chr9:139690144-139795504	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
38	esv1846327	chr9:139690144-139841512	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	86 gene(s)	inside rSNPs	diseases
39	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
40	nsv894466	chr9:139693992-139784683	Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
41	nsv894467	chr9:139693992-139810595	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
42	nsv894468	chr9:139693992-139860264	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
43	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
44	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
45	nsv894471	chr9:139694521-139776400	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	71 gene(s)	inside rSNPs	diseases
46	nsv894472	chr9:139694521-139787453	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
47	nsv894473	chr9:139694521-139810595	Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
48	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
49	nsv894475	chr9:139694569-139786465	Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
50	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2077550	PHPT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139705000-139736800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:139732200-139736600	Genic enhancers	Fetal Intestine Small	intestine
3	chr9:139732400-139737200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:139733000-139737200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:139733400-139737000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:139733800-139736800	Enhancers	HSMMtube	muscle
7	chr9:139734200-139736600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:139734200-139738000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:139734400-139738600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:139734600-139736600	Weak transcription	Small Intestine	intestine
11	chr9:139734600-139737000	Weak transcription	Aorta	Aorta
12	chr9:139734600-139738000	Enhancers	K562	blood
13	chr9:139734800-139736600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr9:139734800-139736800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:139734800-139736800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:139734800-139736800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:139734800-139736800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:139734800-139736800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:139734800-139736800	Enhancers	Fetal Intestine Large	intestine
20	chr9:139734800-139736800	Enhancers	Pancreas	Pancrea
21	chr9:139734800-139736800	Enhancers	Stomach Mucosa	stomach
22	chr9:139734800-139736800	Enhancers	NH-A	brain
23	chr9:139734800-139738400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:139735000-139736800	Weak transcription	Primary T cells from cord blood	blood
25	chr9:139735000-139736800	Enhancers	Brain Angular Gyrus	brain
26	chr9:139735000-139736800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr9:139735000-139736800	Enhancers	HMEC	breast
28	chr9:139735000-139738400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:139735200-139736600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr9:139735200-139736800	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr9:139735200-139736800	Enhancers	Brain Substantia Nigra	brain
32	chr9:139735200-139736800	Enhancers	Hela-S3	cervix
33	chr9:139735200-139738600	Enhancers	Fetal Heart	heart
34	chr9:139735200-139738600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr9:139735200-139738800	Enhancers	Liver	Liver
36	chr9:139735400-139736800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:139735400-139736800	Flanking Active TSS	HepG2	liver
38	chr9:139735400-139736800	Enhancers	Osteobl	bone
39	chr9:139735400-139737000	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr9:139735400-139737800	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr9:139735400-139738600	Enhancers	Psoas Muscle	Psoas
42	chr9:139735600-139736600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr9:139735600-139736600	Enhancers	Dnd41	blood
44	chr9:139735600-139736800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:139735600-139736800	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr9:139735600-139736800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:139735600-139736800	Enhancers	Brain Anterior Caudate	brain
48	chr9:139735600-139736800	Enhancers	NHDF-Ad	bronchial
49	chr9:139735600-139737000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr9:139735600-139738000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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