Variant report

Variant	rs2077734
Chromosome Location	chr1:227123657-227123658
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12564262	0.81[ASN][1000 genomes]
rs12564719	1.00[CHB][hapmap]
rs12565820	0.81[ASN][1000 genomes]
rs12566367	0.81[ASN][1000 genomes]
rs12566572	0.81[ASN][1000 genomes]
rs16846674	1.00[CHB][hapmap];0.91[GIH][hapmap];0.91[ASN][1000 genomes]
rs55931381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56070668	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003656	chr1:227034700-227559665	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv535318	chr1:227034700-227559665	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv873236	chr1:227118912-227173537	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv873237	chr1:227118912-227178948	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv873238	chr1:227118912-227180858	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227083200-227126600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:227102800-227125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:227109600-227126600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:227112200-227125600	Weak transcription	Left Ventricle	heart
5	chr1:227112200-227125800	Weak transcription	Right Atrium	heart
6	chr1:227122000-227125800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:227122800-227126800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:227123000-227123800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:227123000-227126200	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:227123000-227126200	Weak transcription	Osteobl	bone
11	chr1:227123600-227125800	Weak transcription	Primary B cells from cord blood	blood
12	chr1:227123600-227127000	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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