Variant report

Variant	rs2078627
Chromosome Location	chr3:56691925-56691926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10510787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17056889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17056892	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17056999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17057000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17057007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34791716	1.00[AMR][1000 genomes]
rs61743979	1.00[AMR][1000 genomes]
rs62251184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
7	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
9	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
11	chr3:56664800-56711000	Strong transcription	Dnd41	blood
12	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
17	chr3:56669600-56703800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:56675600-56702200	Weak transcription	K562	blood
19	chr3:56675800-56692400	Weak transcription	Right Ventricle	heart
20	chr3:56675800-56693400	Weak transcription	Colonic Mucosa	Colon
21	chr3:56675800-56695200	Weak transcription	Gastric	stomach
22	chr3:56675800-56707000	Weak transcription	Esophagus	oesophagus
23	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:56676000-56705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:56677000-56696600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr3:56677200-56705400	Strong transcription	Primary T cells from cord blood	blood
27	chr3:56680400-56692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:56682400-56694000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:56683600-56702200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:56684000-56693200	Weak transcription	Fetal Brain Male	brain
31	chr3:56684000-56705400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:56684400-56696000	Strong transcription	Fetal Muscle Leg	muscle
33	chr3:56684400-56698200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:56684400-56715200	Weak transcription	Fetal Heart	heart
35	chr3:56684800-56695800	Strong transcription	Fetal Lung	lung
36	chr3:56684800-56706200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:56684800-56707800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:56685000-56707200	Strong transcription	Osteobl	bone
39	chr3:56685400-56700000	Strong transcription	Fetal Stomach	stomach
40	chr3:56685400-56707400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:56685800-56693200	Weak transcription	Pancreas	Pancrea
42	chr3:56686600-56693000	Weak transcription	Fetal Kidney	kidney
43	chr3:56687000-56705400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:56687400-56696200	Strong transcription	Brain Hippocampus Middle	brain
45	chr3:56687600-56701400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr3:56687600-56704800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:56687600-56708200	Strong transcription	Hela-S3	cervix
48	chr3:56687800-56697000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr3:56687800-56707200	Strong transcription	Fetal Intestine Large	intestine
50	chr3:56687800-56707400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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