Variant report

Variant	rs2080845
Chromosome Location	chr5:115745152-115745153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11241389	0.85[ASN][1000 genomes]
rs12521753	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1529490	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17139717	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs254082	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61422287	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845769	chr5:115730278-115763979	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115697600-115748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:115707600-115748400	Weak transcription	Fetal Intestine Large	intestine
3	chr5:115708600-115754000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:115718600-115748400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:115724800-115745600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:115724800-115749200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:115731000-115746800	Weak transcription	Fetal Intestine Small	intestine
11	chr5:115731000-115757000	Weak transcription	Gastric	stomach
12	chr5:115732000-115747000	Weak transcription	Aorta	Aorta
13	chr5:115732600-115746200	Weak transcription	Spleen	Spleen
14	chr5:115732600-115760200	Weak transcription	Liver	Liver
15	chr5:115732800-115745600	Weak transcription	Left Ventricle	heart
16	chr5:115732800-115745600	Weak transcription	Ovary	ovary
17	chr5:115732800-115745600	Weak transcription	Right Atrium	heart
18	chr5:115733000-115745600	Weak transcription	Right Ventricle	heart
19	chr5:115733800-115754400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr5:115734200-115755200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr5:115736000-115745400	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:115736200-115753600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr5:115737600-115751200	Weak transcription	Primary B cells from cord blood	blood
24	chr5:115738600-115746800	Weak transcription	Primary T cells from cord blood	blood
25	chr5:115740200-115745400	Weak transcription	Psoas Muscle	Psoas
26	chr5:115740400-115746400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:115740600-115745200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr5:115740600-115746800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:115741400-115746200	Weak transcription	Brain Anterior Caudate	brain
30	chr5:115741400-115746200	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:115741400-115746200	Weak transcription	Brain Substantia Nigra	brain
32	chr5:115741800-115746800	Weak transcription	Lung	lung
33	chr5:115741800-115751200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:115744600-115747400	Enhancers	Pancreas	Pancrea

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