Variant report

Variant	rs2080858
Chromosome Location	chr5:108625911-108625912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10463599	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11739672	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11741980	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11743452	0.85[ASN][1000 genomes]
rs11744353	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11746207	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11748450	0.85[ASN][1000 genomes]
rs11749718	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1363212	0.84[ASN][1000 genomes]
rs1363213	0.85[ASN][1000 genomes]
rs1592807	0.85[ASN][1000 genomes]
rs1592811	0.85[ASN][1000 genomes]
rs17161659	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17161665	0.85[ASN][1000 genomes]
rs17161674	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1833567	0.85[ASN][1000 genomes]
rs1833568	0.85[ASN][1000 genomes]
rs1833569	0.85[ASN][1000 genomes]
rs1862201	0.85[ASN][1000 genomes]
rs1862202	0.85[ASN][1000 genomes]
rs1862203	0.85[ASN][1000 genomes]
rs1895200	0.85[ASN][1000 genomes]
rs1895201	0.82[ASN][1000 genomes]
rs36123121	0.85[ASN][1000 genomes]
rs4388251	0.85[ASN][1000 genomes]
rs4388252	0.82[ASN][1000 genomes]
rs4392675	0.85[ASN][1000 genomes]
rs4438924	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4541698	0.82[ASN][1000 genomes]
rs57629433	0.85[ASN][1000 genomes]
rs60335509	0.85[ASN][1000 genomes]
rs60878839	0.85[ASN][1000 genomes]
rs6594365	0.85[ASN][1000 genomes]
rs6863688	0.85[ASN][1000 genomes]
rs6863893	0.85[ASN][1000 genomes]
rs6879134	0.85[ASN][1000 genomes]
rs7700458	0.85[ASN][1000 genomes]
rs7704359	0.85[ASN][1000 genomes]
rs7705919	0.85[ASN][1000 genomes]
rs7721272	0.85[ASN][1000 genomes]
rs7721427	0.85[ASN][1000 genomes]
rs7721730	0.85[ASN][1000 genomes]
rs7721870	0.85[ASN][1000 genomes]
rs7722100	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2763481	chr5:108605390-108693696	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108623800-108630200	Weak transcription	Pancreas	Pancrea
2	chr5:108625400-108626400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:108625600-108627200	Weak transcription	Liver	Liver
4	chr5:108625800-108635000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links