Variant report

Variant	rs2081086
Chromosome Location	chr5:57522480-57522481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2081087	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2910577	0.82[EUR][1000 genomes]
rs2964200	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57520600-57526000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:57520800-57526000	Weak transcription	NHEK	skin
3	chr5:57521000-57526000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:57522000-57525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57522000-57525800	Weak transcription	Psoas Muscle	Psoas
7	chr5:57522200-57522600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:57522200-57522600	Enhancers	Osteobl	bone
9	chr5:57522200-57522800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:57522200-57523000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:57522400-57522800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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