Variant report

Variant	rs2081629
Chromosome Location	chr15:50539468-50539469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:50527759..50530671-chr15:50537665..50540543,4	MCF-7	breast:
2	chr15:50535391..50537719-chr15:50538422..50540222,2	K562	blood:
3	chr15:50537821..50541238-chr15:50550138..50551900,3	MCF-7	breast:
4	chr15:50538793..50540544-chr15:50550474..50553061,2	K562	blood:
5	chr15:50511012..50513797-chr15:50539300..50541656,2	MCF-7	breast:
6	chr15:50537515..50540113-chr15:50546589..50548323,2	MCF-7	breast:
7	chr15:50538151..50540836-chr15:50572119..50573804,2	K562	blood:
8	chr15:50534626..50536790-chr15:50538618..50540391,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000241175	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1529341	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1529342	0.86[EUR][1000 genomes]
rs1529343	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1529344	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1549521	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16963474	0.86[EUR][1000 genomes]
rs16963477	0.86[EUR][1000 genomes]
rs16963517	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2073440	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28392818	1.00[EUR][1000 genomes]
rs28758988	0.86[EUR][1000 genomes]
rs34406040	1.00[EUR][1000 genomes]
rs56405312	0.86[EUR][1000 genomes]
rs57018658	1.00[EUR][1000 genomes]
rs57796210	0.86[EUR][1000 genomes]
rs58421641	0.86[EUR][1000 genomes]
rs6493418	1.00[CEU][hapmap]
rs7166052	0.86[EUR][1000 genomes]
rs7166426	0.86[EUR][1000 genomes]
rs7166844	0.86[EUR][1000 genomes]
rs7166950	0.86[EUR][1000 genomes]
rs7167126	0.86[EUR][1000 genomes]
rs7167784	0.86[EUR][1000 genomes]
rs7168181	0.86[EUR][1000 genomes]
rs7183971	0.86[EUR][1000 genomes]
rs73397258	0.86[EUR][1000 genomes]
rs73397259	0.86[EUR][1000 genomes]
rs73397268	0.86[EUR][1000 genomes]
rs73397273	0.86[EUR][1000 genomes]
rs73397279	0.86[EUR][1000 genomes]
rs73397282	0.86[EUR][1000 genomes]
rs8028354	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50503600-50539800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:50508000-50539800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:50530800-50539600	Weak transcription	Hela-S3	cervix
4	chr15:50532400-50549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:50534600-50540000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:50535600-50540600	Weak transcription	Right Atrium	heart
7	chr15:50537000-50539800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:50537200-50544000	Enhancers	Liver	Liver
9	chr15:50538600-50539600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:50538600-50542400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr15:50538800-50539800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr15:50538800-50539800	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:50538800-50539800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:50538800-50541600	Enhancers	K562	blood
15	chr15:50539000-50539600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:50539000-50539800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr15:50539000-50539800	Enhancers	Duodenum Mucosa	Duodenum
18	chr15:50539000-50540200	Weak transcription	HepG2	liver
19	chr15:50539000-50541200	Enhancers	Spleen	Spleen

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