Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:114039370-114039927	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114031113..114032698-chr2:114037168..114039837,2	MCF-7	breast:

Variant related genes	Relation type
PAX8	TF binding region

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508162	chr2:113983043-114099966	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874901	chr2:114022569-114079565	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv998204	chr2:114023917-114075446	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114023200-114039800	Weak transcription	Gastric	stomach
2	chr2:114036400-114039400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:114036400-114039600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:114036600-114043800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:114037400-114040600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:114037400-114043600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:114037600-114042200	Enhancers	Pancreas	Pancrea
8	chr2:114037600-114043800	Enhancers	HMEC	breast
9	chr2:114038000-114039600	Enhancers	A549	lung
10	chr2:114038200-114043800	Enhancers	Fetal Intestine Large	intestine
11	chr2:114038400-114043600	Enhancers	Fetal Intestine Small	intestine
12	chr2:114038600-114040800	Enhancers	NHEK	skin
13	chr2:114038600-114043600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:114038600-114043800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:114039000-114040000	Enhancers	Liver	Liver
16	chr2:114039000-114040000	Enhancers	HepG2	liver
17	chr2:114039000-114040600	Weak transcription	NHDF-Ad	bronchial
18	chr2:114039000-114041400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:114039000-114043800	Enhancers	HSMM	muscle
20	chr2:114039200-114041800	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search: