Variant report

Variant	rs2084177
Chromosome Location	chr2:98363313-98363314
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98363180..98364793-chr2:98365959..98368616,2	K562	blood:
2	chr2:98358429..98361588-chr2:98361675..98364926,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11691641	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002912	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2121272	0.99[EUR][1000 genomes]
rs34747246	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs35321446	0.84[EUR][1000 genomes]
rs62157588	0.91[EUR][1000 genomes]
rs6543040	0.82[CEU][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs6714710	0.81[CEU][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6724539	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98345000-98366400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr2:98348200-98372400	Weak transcription	Esophagus	oesophagus
3	chr2:98348800-98364600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:98354400-98368200	Weak transcription	Colonic Mucosa	Colon
6	chr2:98355000-98373200	Weak transcription	Gastric	stomach
7	chr2:98357000-98365400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr2:98357200-98367400	Weak transcription	Brain Substantia Nigra	brain
9	chr2:98357400-98366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:98357400-98368000	Weak transcription	Lung	lung
11	chr2:98357400-98368600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:98357400-98371400	Weak transcription	Dnd41	blood
13	chr2:98357400-98372000	Weak transcription	Pancreas	Pancrea
14	chr2:98357600-98364600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:98357600-98365800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:98358600-98372000	Weak transcription	Brain Germinal Matrix	brain
17	chr2:98358800-98371600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:98359000-98363600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr2:98359000-98363800	Weak transcription	Fetal Brain Female	brain
20	chr2:98359000-98365000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:98359000-98366600	Weak transcription	Liver	Liver
22	chr2:98359000-98368400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:98359000-98368400	Weak transcription	NHLF	lung
24	chr2:98359200-98363400	Weak transcription	Fetal Heart	heart
25	chr2:98359200-98364000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr2:98359200-98364000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr2:98359200-98364800	Weak transcription	Fetal Thymus	thymus
28	chr2:98359200-98365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr2:98359200-98365000	Weak transcription	Thymus	Thymus
30	chr2:98359200-98365000	Weak transcription	Spleen	Spleen
31	chr2:98359200-98368000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:98359200-98368000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:98359200-98368600	Weak transcription	NH-A	brain
34	chr2:98359200-98368600	Weak transcription	Osteobl	bone
35	chr2:98359200-98371000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr2:98359200-98371200	Weak transcription	Small Intestine	intestine
37	chr2:98359200-98371800	Weak transcription	Right Ventricle	heart
38	chr2:98359200-98382400	Weak transcription	Psoas Muscle	Psoas
39	chr2:98359400-98365200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr2:98359600-98363800	Weak transcription	Left Ventricle	heart
41	chr2:98359600-98365400	Enhancers	Primary T cells fromperipheralblood	blood
42	chr2:98359600-98365400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr2:98359600-98367600	Weak transcription	HMEC	breast
44	chr2:98359600-98368000	Weak transcription	Right Atrium	heart
45	chr2:98359600-98371000	Weak transcription	Brain Angular Gyrus	brain
46	chr2:98359600-98371000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr2:98360200-98365200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:98360200-98371200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr2:98360400-98365000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:98360400-98365400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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