Variant report

Variant	rs2089515
Chromosome Location	chr8:57926726-57926727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12548253	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2174873	0.83[CEU][hapmap]
rs56122395	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6997875	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3430321	chr8:57858417-58055129	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027125	chr8:57891279-58095884	Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2764087	chr8:57919479-57929203	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57923400-57926800	Weak transcription	Brain Substantia Nigra	brain
2	chr8:57923400-57927200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:57923600-57928000	Weak transcription	Fetal Brain Female	brain
4	chr8:57923800-57926800	Weak transcription	Fetal Brain Male	brain
5	chr8:57925800-57926800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:57925800-57927000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:57925800-57927400	Enhancers	Adipose Nuclei	Adipose
8	chr8:57925800-57927400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr8:57925800-57927400	Enhancers	HMEC	breast
10	chr8:57925800-57928400	Enhancers	Fetal Muscle Leg	muscle
11	chr8:57926000-57926800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:57926000-57927200	Enhancers	Spleen	Spleen
13	chr8:57926000-57927400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:57926200-57927400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:57926400-57926800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:57926600-57927200	Enhancers	HSMM	muscle
17	chr8:57926600-57927400	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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