Variant report

Variant	rs2090141
Chromosome Location	chr13:61668568-61668569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3106591	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3106592	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3106601	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3121780	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3121803	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3121804	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3121805	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3121807	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3121808	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3127311	0.85[EUR][1000 genomes]
rs4581602	0.85[EUR][1000 genomes]
rs7319631	0.88[EUR][1000 genomes]
rs9539036	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs969192	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61659800-61668600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr13:61660200-61668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:61664200-61668600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:61664400-61668600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:61666600-61669400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:61668400-61668600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:61668400-61669600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:61668400-61669600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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