Variant report
| Variant | rs2091663 |
|---|---|
| Chromosome Location | chr3:121684624-121684625 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1920295 | 1.00[AMR][1000 genomes] |
| rs1920303 | 1.00[AMR][1000 genomes] |
| rs1920308 | 1.00[AMR][1000 genomes] |
| rs1920311 | 1.00[AMR][1000 genomes] |
| rs1920312 | 1.00[AMR][1000 genomes] |
| rs1920313 | 1.00[AMR][1000 genomes] |
| rs1920315 | 1.00[AMR][1000 genomes] |
| rs2091666 | 1.00[AMR][1000 genomes] |
| rs2332043 | 1.00[AMR][1000 genomes] |
| rs2332045 | 1.00[AMR][1000 genomes] |
| rs2332047 | 1.00[AMR][1000 genomes] |
| rs2332055 | 1.00[AMR][1000 genomes] |
| rs2689275 | 1.00[AMR][1000 genomes] |
| rs2689277 | 1.00[AMR][1000 genomes] |
| rs2700423 | 1.00[AMR][1000 genomes] |
| rs2877567 | 1.00[AMR][1000 genomes] |
| rs34893142 | 1.00[AMR][1000 genomes] |
| rs35264348 | 1.00[AMR][1000 genomes] |
| rs4395433 | 1.00[AMR][1000 genomes] |
| rs4459935 | 1.00[AMR][1000 genomes] |
| rs59621197 | 1.00[AMR][1000 genomes] |
| rs60682200 | 1.00[AMR][1000 genomes] |
| rs61166760 | 1.00[AMR][1000 genomes] |
| rs6438650 | 1.00[AMR][1000 genomes] |
| rs6438659 | 1.00[AMR][1000 genomes] |
| rs6438686 | 1.00[AMR][1000 genomes] |
| rs6768507 | 1.00[AMR][1000 genomes] |
| rs6799626 | 1.00[AMR][1000 genomes] |
| rs6802026 | 1.00[AMR][1000 genomes] |
| rs72963373 | 1.00[AMR][1000 genomes] |
| rs7619800 | 1.00[AMR][1000 genomes] |
| rs9822660 | 1.00[AMR][1000 genomes] |
| rs9878616 | 1.00[AMR][1000 genomes] |
| rs9882454 | 1.00[AMR][1000 genomes] |
| rs9882939 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv33139 | chr3:121500400-122091831 | Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:121670400-121686800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr3:121678800-121693400 | Weak transcription | Primary B cells from cord blood | blood |
