Variant report

Variant	rs209203
Chromosome Location	chr6:28777577-28777578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28774872..28779186-chr6:28780865..28786550,9	K562	blood:
2	chr6:28746343..28748629-chr6:28776362..28778668,2	K562	blood:
3	chr6:28739213..28740105-chr6:28777494..28778016,2	K562	blood:
4	chr6:28768996..28771268-chr6:28774440..28778213,3	K562	blood:
5	chr6:28775179..28778043-chr6:28889400..28891921,3	MCF-7	breast:
6	chr6:28771451..28773263-chr6:28777101..28779175,2	K562	blood:
7	chr6:28774860..28778003-chr6:28805367..28807894,3	K562	blood:
8	chr6:28737526..28738316-chr6:28777463..28778342,2	K562	blood:
9	chr6:28777118..28779341-chr6:28889220..28890745,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225173	Chromatin interaction
ENSG00000204713	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9461482	1.00[EUR][1000 genomes]
rs9468422	1.00[EUR][1000 genomes]
rs9468425	1.00[EUR][1000 genomes]
rs9501038	1.00[EUR][1000 genomes]
rs9501152	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3403106	chr6:28770790-28785189	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28775200-28778200	Weak transcription	Right Atrium	heart
2	chr6:28775600-28778600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:28775600-28778600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:28776400-28777800	Active TSS	HMEC	breast
5	chr6:28776800-28779200	Weak transcription	Hela-S3	cervix
6	chr6:28777000-28777600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:28777000-28778600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:28777000-28779000	Active TSS	A549	lung
9	chr6:28777200-28777800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:28777200-28778000	Active TSS	K562	blood
11	chr6:28777200-28778400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:28777400-28777600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:28777400-28777600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:28777400-28777600	Active TSS	HepG2	liver
15	chr6:28777400-28777800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:28777400-28777800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:28777400-28777800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:28777400-28778000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr6:28777400-28778000	Bivalent/Poised TSS	Placenta	Placenta
20	chr6:28777400-28778400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr6:28777400-28778600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr6:28777400-28778600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell

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