Variant report

Variant	rs2092140
Chromosome Location	chr6:166753536-166753537
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:166752864..166754601-chr6:166821348..166823420,2	K562	blood:
2	chr6:166687858..166689609-chr6:166751857..166754422,2	K562	blood:
3	chr6:166712983..166714666-chr6:166752860..166755099,2	K562	blood:
4	chr6:166751664..166755250-chr6:166772904..166776274,3	K562	blood:
5	chr6:166752914..166754898-chr6:166799719..166801718,2	K562	blood:
6	chr6:166751804..166757558-chr6:166793969..166799153,5	K562	blood:
7	chr6:166722256..166724406-chr6:166752301..166754007,2	MCF-7	breast:
8	chr6:166753320..166757958-chr6:166794622..166799153,8	K562	blood:
9	chr6:166750967..166754365-chr6:166755785..166758738,3	MCF-7	breast:
10	chr6:166751208..166754791-chr6:166757264..166760335,3	MCF-7	breast:
11	chr6:166751783..166754110-chr6:166780871..166783189,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction
ENSG00000060762	Chromatin interaction
ENSG00000261420	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12209828	0.81[ASN][1000 genomes]
rs4318852	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60636526	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9347122	0.84[EUR][1000 genomes]
rs9355573	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9356475	0.84[EUR][1000 genomes]
rs9356477	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166733200-166753600	Weak transcription	Fetal Heart	heart
2	chr6:166733800-166753800	Weak transcription	Hela-S3	cervix
3	chr6:166734600-166754800	Weak transcription	HUVEC	blood vessel
4	chr6:166738200-166754200	Weak transcription	NH-A	brain
5	chr6:166739400-166755400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:166742600-166754000	Weak transcription	Fetal Kidney	kidney
7	chr6:166744400-166754800	Weak transcription	NHDF-Ad	bronchial
8	chr6:166745400-166754400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:166745400-166755000	Weak transcription	A549	lung
10	chr6:166746200-166753800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:166746200-166754800	Genic enhancers	Primary B cells from peripheral blood	blood
12	chr6:166747200-166754600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:166747600-166753800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:166747600-166754000	Strong transcription	Fetal Stomach	stomach
15	chr6:166747800-166755000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:166748000-166754000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:166748200-166754400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:166748200-166754800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:166748400-166754600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:166748600-166753800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:166749400-166754000	Weak transcription	Osteobl	bone
22	chr6:166749400-166754800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:166750600-166754800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:166750800-166755000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr6:166750800-166755000	Weak transcription	Aorta	Aorta
26	chr6:166751000-166753800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:166751000-166754200	Strong transcription	HSMM	muscle
28	chr6:166751000-166754800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:166751400-166753600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:166751400-166754000	Weak transcription	NHLF	lung
31	chr6:166751400-166754400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:166751400-166754800	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr6:166751400-166755000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:166751400-166755000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:166751600-166753800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:166751600-166754800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:166751600-166755000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:166751600-166755000	Weak transcription	HSMMtube	muscle
39	chr6:166751600-166755200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:166751800-166753600	Weak transcription	Liver	Liver
41	chr6:166751800-166753600	Enhancers	Brain Germinal Matrix	brain
42	chr6:166751800-166753800	Weak transcription	Fetal Lung	lung
43	chr6:166751800-166753800	Genic enhancers	HepG2	liver
44	chr6:166751800-166754000	Enhancers	Colon Smooth Muscle	Colon
45	chr6:166751800-166754400	Weak transcription	HMEC	breast
46	chr6:166751800-166754800	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr6:166751800-166755000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:166751800-166755000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:166751800-166755000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:166752000-166753800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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