Variant report

Variant	rs2094039
Chromosome Location	chr1:70066557-70066558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70065057..70067480-chr1:70071897..70074057,2	K562	blood:

Variant related genes	Relation type
ENSG00000270615	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1245045	0.85[AMR][1000 genomes]
rs1245046	0.85[AMR][1000 genomes]
rs1245048	0.95[ASN][1000 genomes]
rs1245049	0.85[AMR][1000 genomes]
rs1245050	0.85[AMR][1000 genomes]
rs1245051	0.82[AMR][1000 genomes]
rs1245053	0.95[ASN][1000 genomes]
rs1245054	0.85[AMR][1000 genomes]
rs1245056	0.85[AMR][1000 genomes]
rs1245057	0.82[AMR][1000 genomes]
rs1245058	0.85[AMR][1000 genomes]
rs1245061	0.84[AMR][1000 genomes]
rs1261871	0.85[AMR][1000 genomes]
rs1270434	0.85[AMR][1000 genomes]
rs1271928	0.85[AMR][1000 genomes]
rs1341779	0.85[AMR][1000 genomes]
rs1341780	0.85[AMR][1000 genomes]
rs1341781	0.85[AMR][1000 genomes]
rs1361613	0.85[AMR][1000 genomes]
rs1418007	0.85[AMR][1000 genomes]
rs1418008	0.84[AMR][1000 genomes]
rs1418012	0.84[AMR][1000 genomes]
rs1622158	0.85[AMR][1000 genomes]
rs1622893	0.82[AMR][1000 genomes]
rs1623673	0.85[AMR][1000 genomes]
rs1625490	0.85[AMR][1000 genomes]
rs1627769	0.85[AMR][1000 genomes]
rs1628716	0.85[AMR][1000 genomes]
rs1631834	0.85[AMR][1000 genomes]
rs1749459	0.81[AMR][1000 genomes]
rs1749504	0.95[ASN][1000 genomes]
rs1749505	0.95[ASN][1000 genomes]
rs1749506	0.85[AMR][1000 genomes]
rs1749507	0.85[AMR][1000 genomes]
rs1749508	0.85[AMR][1000 genomes]
rs1749512	0.85[AMR][1000 genomes]
rs1749513	0.95[ASN][1000 genomes]
rs1749514	0.85[AMR][1000 genomes]
rs1749515	0.95[ASN][1000 genomes]
rs1749517	0.85[AMR][1000 genomes]
rs1749520	0.85[AMR][1000 genomes]
rs1773309	0.85[AMR][1000 genomes]
rs1773312	0.95[ASN][1000 genomes]
rs1773313	0.85[AMR][1000 genomes]
rs1773314	0.85[AMR][1000 genomes]
rs1773315	0.85[AMR][1000 genomes]
rs1773316	0.85[AMR][1000 genomes]
rs1773317	0.85[AMR][1000 genomes]
rs1773318	0.85[AMR][1000 genomes]
rs1773319	0.85[AMR][1000 genomes]
rs1773320	0.85[AMR][1000 genomes]
rs1773321	0.85[AMR][1000 genomes]
rs1773322	0.85[AMR][1000 genomes]
rs1773323	0.95[ASN][1000 genomes]
rs1773324	0.85[AMR][1000 genomes]
rs1773327	0.85[AMR][1000 genomes]
rs2094037	0.85[AMR][1000 genomes]
rs2094038	0.85[AMR][1000 genomes]
rs2104407	0.81[ASN][1000 genomes]
rs2209456	0.85[AMR][1000 genomes]
rs227097	0.82[ASN][1000 genomes]
rs227100	0.82[ASN][1000 genomes]
rs227107	0.91[ASN][1000 genomes]
rs227108	0.91[ASN][1000 genomes]
rs227113	0.82[ASN][1000 genomes]
rs227114	0.82[ASN][1000 genomes]
rs2487762	0.85[AMR][1000 genomes]
rs2487763	0.85[AMR][1000 genomes]
rs2487764	0.85[AMR][1000 genomes]
rs2764535	0.85[AMR][1000 genomes]
rs966069	0.85[AMR][1000 genomes]
rs966070	0.85[AMR][1000 genomes]
rs966071	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70055000-70069800	Weak transcription	Fetal Brain Male	brain
2	chr1:70062200-70080200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:70066400-70071000	Weak transcription	Fetal Brain Female	brain

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