Variant report

Variant	rs2095136
Chromosome Location	chr1:170308792-170308793
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10494488	1.00[EUR][1000 genomes]
rs10919380	1.00[EUR][1000 genomes]
rs10919385	1.00[EUR][1000 genomes]
rs12058102	1.00[EUR][1000 genomes]
rs12059763	1.00[EUR][1000 genomes]
rs12067967	1.00[EUR][1000 genomes]
rs12071682	1.00[EUR][1000 genomes]
rs12088917	1.00[EUR][1000 genomes]
rs12091696	1.00[EUR][1000 genomes]
rs12096909	1.00[EUR][1000 genomes]
rs12097499	1.00[EUR][1000 genomes]
rs13375039	1.00[EUR][1000 genomes]
rs13375419	1.00[EUR][1000 genomes]
rs13376452	1.00[EUR][1000 genomes]
rs1556499	1.00[EUR][1000 genomes]
rs16863293	1.00[EUR][1000 genomes]
rs28545641	1.00[EUR][1000 genomes]
rs58151495	1.00[EUR][1000 genomes]
rs6701383	1.00[EUR][1000 genomes]
rs7518635	1.00[EUR][1000 genomes]
rs7554519	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170306200-170309200	Weak transcription	Psoas Muscle	Psoas
2	chr1:170306600-170309200	Weak transcription	Ovary	ovary
3	chr1:170308000-170309400	Enhancers	Fetal Heart	heart
4	chr1:170308200-170309000	Weak transcription	Right Atrium	heart
5	chr1:170308200-170309200	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links