Variant report

Variant	rs2100865
Chromosome Location	chr6:110388441-110388442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73531696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533822	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1017551	chr6:110385054-110413225	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023185	chr6:110386197-110416868	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110383200-110391000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:110385200-110389000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:110385200-110389800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:110385200-110391200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:110385400-110388600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:110387400-110388800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:110387400-110389400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:110387800-110391600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:110388200-110388600	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:110388400-110388600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:110388400-110388600	Enhancers	Brain Anterior Caudate	brain
12	chr6:110388400-110389000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:110388400-110389400	Enhancers	Fetal Brain Male	brain
14	chr6:110388400-110389600	Enhancers	Brain Substantia Nigra	brain
15	chr6:110388400-110391400	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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