Variant report

Variant	rs2100928
Chromosome Location	chr9:96155812-96155813
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10739947	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10739949	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10821122	0.86[AMR][1000 genomes]
rs10821123	0.82[CEU][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10992716	0.93[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96153200-96156200	Enhancers	Placenta	Placenta
2	chr9:96153400-96161000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:96153600-96156000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr9:96154800-96156000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:96155200-96156000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:96155200-96156000	ZNF genes & repeats	Lung	lung
7	chr9:96155600-96156000	Enhancers	Colonic Mucosa	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links