Variant report

Variant	rs210158
Chromosome Location	chr6:33519308-33519309
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs169738	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs169740	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs183300	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs210126	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs210133	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs210156	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs210160	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs210161	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs210170	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs210198	0.84[AMR][1000 genomes]
rs210199	0.88[AMR][1000 genomes]
rs6910233	0.85[EUR][1000 genomes]
rs9380369	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3517133	chr6:33519201-33519503	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33514000-33519800	Enhancers	Placenta	Placenta
2	chr6:33516000-33523800	Weak transcription	GM12878-XiMat	blood
3	chr6:33516600-33521800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:33516800-33537600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:33517800-33524800	Weak transcription	Esophagus	oesophagus
6	chr6:33518000-33520200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:33518000-33520800	Weak transcription	NHEK	skin
8	chr6:33519000-33519600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:33519000-33519800	Enhancers	Fetal Muscle Leg	muscle
10	chr6:33519200-33519800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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