Variant report

Variant	rs2101685
Chromosome Location	chr9:72581202-72581203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72579585..72583057-chr9:72584421..72588172,5	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10868308	0.87[ASN][1000 genomes]
rs10868315	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10868316	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10868328	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11141057	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11788737	0.85[ASN][1000 genomes]
rs12236860	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7035391	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9697092	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72577200-72584400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:72579800-72581400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:72580000-72586600	Weak transcription	HMEC	breast
4	chr9:72580200-72581400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr9:72580400-72585400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:72580400-72585600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:72580400-72585600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:72580400-72586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:72580400-72586600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:72580400-72586800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:72580400-72590600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:72580600-72582400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:72580600-72582600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:72580600-72584400	Weak transcription	Aorta	Aorta
15	chr9:72580600-72591000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:72580800-72581400	Enhancers	Osteobl	bone
17	chr9:72580800-72584400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:72580800-72584600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:72580800-72586400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:72581000-72584600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:72581200-72584400	Weak transcription	NHDF-Ad	bronchial
22	chr9:72581200-72584800	Weak transcription	NHLF	lung
23	chr9:72581200-72585800	Weak transcription	NH-A	brain

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