Variant report

Variant	rs210217
Chromosome Location	chr6:33573602-33573603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33567572..33569907-chr6:33573549..33575919,2	MCF-7	breast:
2	chr6:33562478..33565325-chr6:33572841..33575005,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10947414	0.93[EUR][1000 genomes]
rs210120	0.93[EUR][1000 genomes]
rs210121	0.93[EUR][1000 genomes]
rs210122	0.93[EUR][1000 genomes]
rs210214	0.88[EUR][1000 genomes]
rs210215	0.93[EUR][1000 genomes]
rs2988058	0.94[EUR][1000 genomes]
rs3916279	0.84[ASN][1000 genomes]
rs444697	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
5	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
6	esv3473947	chr6:33572421-33574288	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3473948	chr6:33572588-33574246	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33567600-33574200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33567600-33575800	Weak transcription	Right Atrium	heart
3	chr6:33567600-33575800	Weak transcription	Right Ventricle	heart
4	chr6:33567800-33574400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:33567800-33575000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:33567800-33575400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:33568600-33574400	Weak transcription	HMEC	breast
8	chr6:33571600-33579000	Enhancers	Placenta	Placenta
9	chr6:33571800-33574400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:33571800-33574800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:33572200-33574400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:33572200-33574600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:33572200-33576800	Weak transcription	Lung	lung
14	chr6:33572400-33574600	Weak transcription	Hela-S3	cervix
15	chr6:33572600-33575000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:33572800-33573800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:33573200-33574400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:33573200-33574600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:33573200-33574800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:33573200-33576600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:33573400-33574200	Weak transcription	HepG2	liver
22	chr6:33573400-33574600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:33573400-33574800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:33573400-33575000	Weak transcription	A549	lung
25	chr6:33573400-33575400	Weak transcription	NHDF-Ad	bronchial
26	chr6:33573400-33575800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:33573400-33575800	Weak transcription	HSMM	muscle
28	chr6:33573400-33576200	Weak transcription	HSMMtube	muscle
29	chr6:33573400-33577200	Weak transcription	Fetal Intestine Large	intestine
30	chr6:33573400-33577600	Weak transcription	Colonic Mucosa	Colon

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