Variant report

Variant	rs210282
Chromosome Location	chr10:43087649-43087650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43085459..43087807-chr10:43088935..43091913,2	K562	blood:

Variant related genes	Relation type
ENSG00000272373	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11239614	0.89[ASN][1000 genomes]
rs11239615	0.89[ASN][1000 genomes]
rs11239762	1.00[CHB][hapmap]
rs11499092	0.89[ASN][1000 genomes]
rs11499093	0.89[ASN][1000 genomes]
rs11499095	0.89[ASN][1000 genomes]
rs12246683	1.00[CHB][hapmap]
rs12259795	0.89[ASN][1000 genomes]
rs12264895	0.85[EUR][1000 genomes]
rs13376880	1.00[CHB][hapmap]
rs17158044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1831915	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1855444	1.00[JPT][hapmap]
rs1855450	0.89[ASN][1000 genomes]
rs1855460	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1889310	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs209375	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs209376	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs209377	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs209380	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs209381	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs209385	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs209386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs209387	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209388	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209389	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs209390	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209391	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs209392	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs210221	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210222	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210236	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210240	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes]
rs210259	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs210260	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs210263	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210267	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210280	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs210281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210285	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210299	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs210300	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35917885	0.89[ASN][1000 genomes]
rs3740329	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4450129	1.00[CHB][hapmap]
rs549167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55766110	0.89[ASN][1000 genomes]
rs574720	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs603671	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630838	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs644175	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6593345	0.89[ASN][1000 genomes]
rs6593349	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68055	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs683538	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7072200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073731	0.85[EUR][1000 genomes]
rs7076849	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs7088389	0.85[EUR][1000 genomes]
rs7099013	0.85[EUR][1000 genomes]
rs7893674	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs7911186	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs7919712	0.88[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550670	chr10:42725663-43089965	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs210282	ZNF33B	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43076000-43088400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:43077600-43088000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:43077800-43109600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:43080800-43088000	Weak transcription	Right Ventricle	heart
5	chr10:43081000-43087800	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:43081000-43087800	Weak transcription	Psoas Muscle	Psoas
7	chr10:43081400-43087800	Weak transcription	Brain Anterior Caudate	brain
8	chr10:43081800-43092000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:43082000-43092200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:43082200-43092600	ZNF genes & repeats	Liver	Liver
11	chr10:43082600-43091400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr10:43083000-43091400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr10:43083000-43091400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr10:43083000-43091400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr10:43083000-43094800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr10:43083200-43091200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
17	chr10:43083200-43091400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
18	chr10:43083400-43091400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
19	chr10:43083800-43091400	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr10:43084400-43087800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:43084400-43088800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:43084600-43091400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
23	chr10:43084800-43092600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:43085000-43092400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:43085200-43088000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:43085200-43091200	ZNF genes & repeats	Adipose Nuclei	Adipose
27	chr10:43085200-43096400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr10:43085400-43091200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
29	chr10:43085600-43091400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:43085600-43092400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:43085800-43088200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:43086000-43090600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:43086000-43091400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
34	chr10:43086000-43091400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
35	chr10:43086200-43090400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:43086200-43091000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
37	chr10:43086200-43091200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:43086200-43091200	Strong transcription	Fetal Thymus	thymus
39	chr10:43086200-43091200	ZNF genes & repeats	A549	lung
40	chr10:43086400-43088200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
41	chr10:43086400-43088200	Strong transcription	Colon Smooth Muscle	Colon
42	chr10:43086400-43088200	Strong transcription	Left Ventricle	heart
43	chr10:43086400-43088800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr10:43086400-43089600	ZNF genes & repeats	Ovary	ovary
45	chr10:43086400-43089800	Strong transcription	Brain Angular Gyrus	brain
46	chr10:43086400-43089800	ZNF genes & repeats	Fetal Muscle Leg	muscle
47	chr10:43086400-43090000	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:43086400-43090400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:43086400-43090400	Strong transcription	Placenta	Placenta
50	chr10:43086400-43091200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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