Variant report

Variant	rs2103360
Chromosome Location	chr12:62398557-62398558
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10431508	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs11174272	0.99[ASN][1000 genomes]
rs11174273	0.99[ASN][1000 genomes]
rs12229456	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1440722	0.80[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1583845	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs59936004	0.98[ASN][1000 genomes]
rs74096157	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62397600-62398600	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links