Variant report

Variant	rs2104081
Chromosome Location	chr14:24972446-24972447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10139151	0.83[AMR][1000 genomes]
rs10140250	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11621180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12893439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1885107	0.83[AMR][1000 genomes]
rs1885110	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1956922	0.83[AMR][1000 genomes]
rs1956924	0.83[AMR][1000 genomes]
rs1956926	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1956928	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1956929	0.83[AMR][1000 genomes]
rs1956930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1956933	0.83[AMR][1000 genomes]
rs1998229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1998230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2093257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2093258	0.85[AFR][1000 genomes]
rs2104080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2104082	0.94[AFR][1000 genomes]
rs2332353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2332354	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2877647	0.83[AMR][1000 genomes]
rs4379989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4505221	0.83[AMR][1000 genomes]
rs4600392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573821	0.83[AMR][1000 genomes]
rs6573835	0.83[AMR][1000 genomes]
rs6573840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71411749	0.80[AFR][1000 genomes]
rs7151870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs761997	0.83[AMR][1000 genomes]
rs8011895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs911371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9743665	0.96[AFR][1000 genomes]
rs9743926	0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1053330	chr14:24908047-24993666	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	n/a
4	esv2761824	chr14:24914008-24993666	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
5	nsv1043355	chr14:24914008-24993666	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
6	nsv1045732	chr14:24914008-25019317	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
7	nsv523200	chr14:24915383-24975032	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
8	nsv521915	chr14:24915383-24992619	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
9	nsv564062	chr14:24915383-24992619	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
10	nsv1039955	chr14:24927313-24993666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
11	nsv1035903	chr14:24929447-24981097	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
12	nsv542001	chr14:24929447-24981097	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
13	nsv1042290	chr14:24930993-24990765	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
14	nsv542002	chr14:24930993-24990765	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
15	nsv983932	chr14:24967593-24993536	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24968600-24973200	Weak transcription	Pancreas	Pancrea
2	chr14:24971200-24977800	Weak transcription	Gastric	stomach
3	chr14:24971400-24972600	Weak transcription	Liver	Liver
4	chr14:24972400-24974000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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