Variant report

Variant	rs2105012
Chromosome Location	chr6:80010192-80010193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10455357	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs12202025	0.89[JPT][hapmap];1.00[LWK][hapmap]
rs12207187	0.82[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6937425	0.93[ASN][1000 genomes]
rs9352712	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2105012	FCER2	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79988600-80011000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:80007000-80010200	Weak transcription	Placenta	Placenta
3	chr6:80010000-80010200	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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