Variant report

Variant	rs210609
Chromosome Location	chr6:117833361-117833362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117824091..117826926-chr6:117830247..117833617,3	MCF-7	breast:
2	chr6:117826638..117828169-chr6:117832301..117834365,2	K562	blood:
3	chr6:117833098..117835589-chr6:117838290..117840609,2	K562	blood:
4	chr6:117833098..117835004-chr6:117837097..117839790,2	K562	blood:
5	chr6:117828659..117831265-chr6:117832273..117834638,2	K562	blood:
6	chr6:117824027..117828169-chr6:117829590..117834365,6	K562	blood:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs210613	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs210645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210652	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210653	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs210609	DCBLD1	cis	Thyroid	GTEx

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117805200-117851200	Weak transcription	Right Ventricle	heart
2	chr6:117816400-117841400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:117818400-117833600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:117819800-117834200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:117819800-117868800	Weak transcription	Spleen	Spleen
6	chr6:117821600-117868800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:117821800-117843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:117823200-117868800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:117823200-117869600	Weak transcription	Small Intestine	intestine
10	chr6:117825400-117833400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:117826200-117842600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:117826200-117844800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:117826400-117859800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:117826600-117833400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:117827000-117834200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:117827200-117841600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:117827600-117851200	Weak transcription	Lung	lung
18	chr6:117828000-117833600	Weak transcription	Aorta	Aorta
19	chr6:117828000-117833600	Weak transcription	Gastric	stomach
20	chr6:117828000-117834400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:117828000-117834400	Weak transcription	Psoas Muscle	Psoas
22	chr6:117828000-117836400	Weak transcription	Liver	Liver
23	chr6:117828000-117841400	Weak transcription	Left Ventricle	heart
24	chr6:117828000-117866200	Weak transcription	Esophagus	oesophagus
25	chr6:117828200-117841000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:117828200-117851000	Weak transcription	Right Atrium	heart
27	chr6:117828400-117834400	Weak transcription	HSMMtube	muscle
28	chr6:117828400-117851600	Weak transcription	NHLF	lung
29	chr6:117828600-117833400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:117828600-117833800	Weak transcription	Fetal Kidney	kidney
31	chr6:117828800-117834000	Strong transcription	HSMM	muscle
32	chr6:117829000-117833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:117829000-117834600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:117830400-117834200	Weak transcription	Fetal Lung	lung
35	chr6:117830400-117834400	Weak transcription	Pancreas	Pancrea
36	chr6:117830400-117834600	Weak transcription	Fetal Intestine Large	intestine
37	chr6:117831000-117833600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:117831000-117834400	Weak transcription	Fetal Intestine Small	intestine
39	chr6:117831000-117835400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:117831400-117833600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:117831600-117834000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:117832000-117833800	Enhancers	NHEK	skin
43	chr6:117832000-117834400	Genic enhancers	Muscle Satellite Cultured Cells	--
44	chr6:117832000-117835000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:117832200-117834800	Enhancers	Osteobl	bone
46	chr6:117832200-117835200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr6:117832400-117833400	Enhancers	A549	lung
48	chr6:117832400-117834400	Weak transcription	Fetal Stomach	stomach
49	chr6:117832400-117835400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:117832400-117835800	Enhancers	NH-A	brain

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