Variant report

Variant	rs210610
Chromosome Location	chr6:117834444-117834445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117833098..117835589-chr6:117838290..117840609,2	K562	blood:
2	chr6:117833098..117835004-chr6:117837097..117839790,2	K562	blood:
3	chr6:117828659..117831265-chr6:117832273..117834638,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1321813	0.80[YRI][hapmap]
rs210648	0.81[GIH][hapmap]
rs9766914	0.94[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117805200-117851200	Weak transcription	Right Ventricle	heart
2	chr6:117816400-117841400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:117819800-117868800	Weak transcription	Spleen	Spleen
4	chr6:117821600-117868800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:117821800-117843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:117823200-117868800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:117823200-117869600	Weak transcription	Small Intestine	intestine
8	chr6:117826200-117842600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:117826200-117844800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:117826400-117859800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:117827200-117841600	Weak transcription	Adipose Nuclei	Adipose
12	chr6:117827600-117851200	Weak transcription	Lung	lung
13	chr6:117828000-117836400	Weak transcription	Liver	Liver
14	chr6:117828000-117841400	Weak transcription	Left Ventricle	heart
15	chr6:117828000-117866200	Weak transcription	Esophagus	oesophagus
16	chr6:117828200-117841000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:117828200-117851000	Weak transcription	Right Atrium	heart
18	chr6:117828400-117851600	Weak transcription	NHLF	lung
19	chr6:117829000-117834600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:117830400-117834600	Weak transcription	Fetal Intestine Large	intestine
21	chr6:117831000-117835400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:117832000-117835000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:117832200-117834800	Enhancers	Osteobl	bone
24	chr6:117832200-117835200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:117832400-117835400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:117832400-117835800	Enhancers	NH-A	brain
27	chr6:117832400-117841600	Weak transcription	HUVEC	blood vessel
28	chr6:117832600-117835800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:117833000-117839200	Enhancers	HepG2	liver
30	chr6:117833400-117834800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:117833400-117834800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr6:117833600-117835200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:117833600-117835800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:117833600-117838000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:117833600-117851600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:117833800-117847000	Weak transcription	NHEK	skin
37	chr6:117833800-117849200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:117834000-117834600	Weak transcription	HSMM	muscle
39	chr6:117834000-117838400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:117834000-117838400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:117834000-117838400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:117834000-117840800	Weak transcription	HMEC	breast
43	chr6:117834200-117834600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr6:117834200-117834800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:117834200-117834800	Enhancers	Aorta	Aorta
46	chr6:117834200-117835000	Enhancers	Fetal Lung	lung
47	chr6:117834200-117835600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:117834200-117836800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:117834400-117834600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:117834400-117834600	Enhancers	Fetal Intestine Small	intestine

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