Variant report

Variant	rs210636
Chromosome Location	chr6:117884738-117884739
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117870867..117873766-chr6:117883211..117885985,2	K562	blood:
2	chr6:117872266..117873879-chr6:117883211..117885838,2	K562	blood:
3	chr6:117883980..117886013-chr6:117996305..117998941,2	K562	blood:

Variant related genes	Relation type
ENSG00000153989	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11153678	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153686	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11153687	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11153689	0.89[EUR][1000 genomes]
rs12665677	0.89[EUR][1000 genomes]
rs1472591	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17079404	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs210616	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210618	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210621	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210625	0.81[ASN][1000 genomes]
rs210627	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs210628	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs210629	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210631	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs210632	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs210634	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs210638	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210643	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28650886	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs389663	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4443534	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56314470	0.89[EUR][1000 genomes]
rs60541940	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62430987	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62430988	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62430989	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62431047	0.89[EUR][1000 genomes]
rs62431051	0.89[EUR][1000 genomes]
rs62431052	0.87[EUR][1000 genomes]
rs9320611	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372483	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9374675	0.89[EUR][1000 genomes]
rs9387489	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387490	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9387496	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9387497	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9401015	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9401016	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9401017	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9689424	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9689805	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689889	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117869800-117885200	Weak transcription	Fetal Stomach	stomach
2	chr6:117869800-117889000	Weak transcription	Left Ventricle	heart
3	chr6:117869800-117889400	Weak transcription	Psoas Muscle	Psoas
4	chr6:117869800-117889600	Weak transcription	Colonic Mucosa	Colon
5	chr6:117869800-117894400	Weak transcription	Lung	lung
6	chr6:117869800-117903800	Weak transcription	Spleen	Spleen
7	chr6:117869800-117904000	Weak transcription	Gastric	stomach
8	chr6:117869800-117904000	Weak transcription	Pancreas	Pancrea
9	chr6:117870000-117886800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:117870400-117886800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:117870400-117889600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:117870400-117889600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:117870600-117886800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:117871000-117889600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:117871000-117889800	Weak transcription	Fetal Heart	heart
16	chr6:117871200-117888400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:117871400-117885200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:117871600-117922600	Weak transcription	Stomach Mucosa	stomach
19	chr6:117872200-117887000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:117872200-117887400	Weak transcription	Fetal Lung	lung
21	chr6:117872200-117894600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:117872200-117905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:117872400-117885800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:117872400-117889000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:117872400-117889600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:117874600-117921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:117874800-117886600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:117875200-117893800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:117876800-117887600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:117876800-117919800	Weak transcription	Hela-S3	cervix
31	chr6:117877000-117887000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:117877000-117903800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:117877200-117886800	Weak transcription	HUVEC	blood vessel
34	chr6:117877200-117887200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:117877200-117887200	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:117877200-117888000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:117877200-117889400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:117879800-117884800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:117879800-117884800	Strong transcription	HSMM	muscle
40	chr6:117879800-117900400	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr6:117880000-117884800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr6:117880000-117888200	Strong transcription	HSMMtube	muscle
43	chr6:117880200-117901000	Strong transcription	Osteobl	bone
44	chr6:117880400-117892200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:117880400-117895800	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr6:117880400-117900800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:117880600-117887200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:117880600-117899800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:117880800-117886800	Weak transcription	NHEK	skin
50	chr6:117880800-117887200	Weak transcription	Brain Hippocampus Middle	brain

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