Variant report

Variant	rs2107922
Chromosome Location	chr7:98974939-98974940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98970407..98975516-chr7:99002028..99009396,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106244	Chromatin interaction
ENSG00000106245	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10155966	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10236149	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10243678	0.88[EUR][1000 genomes]
rs10249167	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10255399	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10258757	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10270459	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10270917	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10272998	0.86[EUR][1000 genomes]
rs10274407	0.86[EUR][1000 genomes]
rs10953287	0.86[EUR][1000 genomes]
rs11762273	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2072181	0.87[EUR][1000 genomes]
rs2286162	0.86[EUR][1000 genomes]
rs2404322	0.81[ASN][1000 genomes]
rs2404323	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28495024	0.87[EUR][1000 genomes]
rs28820905	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3801288	0.86[EUR][1000 genomes]
rs6943920	0.86[EUR][1000 genomes]
rs6953476	0.86[EUR][1000 genomes]
rs6972337	0.86[EUR][1000 genomes]
rs6975099	0.86[EUR][1000 genomes]
rs9641253	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98970800-98977000	Weak transcription	Fetal Lung	lung
2	chr7:98971000-98990400	Weak transcription	Fetal Kidney	kidney
3	chr7:98973200-98978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:98973400-98975000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:98973400-98975000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:98973400-98975000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:98973400-98975400	Enhancers	HMEC	breast
8	chr7:98973400-98975400	Weak transcription	Osteobl	bone
9	chr7:98973400-98975600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:98973400-98976600	Weak transcription	NH-A	brain
11	chr7:98973400-98976600	Weak transcription	NHLF	lung
12	chr7:98973400-98976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:98973400-98976800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:98973400-98976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:98973400-98976800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:98973400-98976800	Weak transcription	HSMM	muscle
17	chr7:98973400-98976800	Weak transcription	HSMMtube	muscle
18	chr7:98973400-98977000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:98973400-98977000	Weak transcription	Brain Anterior Caudate	brain
20	chr7:98973400-98977000	Weak transcription	Brain Hippocampus Middle	brain
21	chr7:98973400-98977000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:98973400-98977000	Weak transcription	Esophagus	oesophagus
23	chr7:98973400-98977000	Weak transcription	Right Atrium	heart
24	chr7:98973400-98977200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:98973400-98977200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:98973400-98977200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:98973400-98977200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:98973400-98977600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:98973400-98977600	Weak transcription	Brain Substantia Nigra	brain
30	chr7:98973400-98977600	Weak transcription	Fetal Heart	heart
31	chr7:98973400-98977600	Weak transcription	Small Intestine	intestine
32	chr7:98973400-98978400	Weak transcription	Psoas Muscle	Psoas
33	chr7:98973400-98978600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:98973400-98978800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:98973400-98979000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:98973400-98979200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:98973400-98984000	Weak transcription	Aorta	Aorta
38	chr7:98973400-98984200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:98973400-98984200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:98973400-98984200	Weak transcription	Ovary	ovary
41	chr7:98973400-98984400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr7:98973400-98987400	Weak transcription	Brain Germinal Matrix	brain
43	chr7:98973400-98987800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:98973400-98989800	Weak transcription	Brain Angular Gyrus	brain
45	chr7:98973600-98975400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:98973600-98976000	Genic enhancers	Primary B cells from peripheral blood	blood
47	chr7:98973600-98976600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:98973600-98976600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:98973600-98976600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:98973600-98976800	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links