Variant report

Variant	rs2109274
Chromosome Location	chr14:72323425-72323426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1558297	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2079818	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2159460	0.93[ASN][1000 genomes]
rs2533015	0.89[ASN][1000 genomes]
rs2533044	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2533051	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2533056	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2533057	0.99[ASN][1000 genomes]
rs2802597	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs887402	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs887403	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv565044	chr14:72317961-72336142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72322400-72323600	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:72322400-72323600	Enhancers	Primary hematopoietic stem cells	blood
3	chr14:72322400-72323600	Enhancers	GM12878-XiMat	blood
4	chr14:72322400-72324000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:72322600-72323600	Enhancers	Dnd41	blood
6	chr14:72322600-72324000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:72322800-72323600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:72322800-72323600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:72322800-72324000	Enhancers	Primary B cells from cord blood	blood
10	chr14:72323000-72323600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:72323000-72323600	Enhancers	Adipose Nuclei	Adipose
12	chr14:72323000-72323600	Enhancers	Left Ventricle	heart
13	chr14:72323000-72323600	Enhancers	Lung	lung
14	chr14:72323000-72323600	Enhancers	Spleen	Spleen
15	chr14:72323000-72323600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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