Variant report

Variant	rs2110358
Chromosome Location	chr5:127162071-127162072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10057750	0.82[ASN][1000 genomes]
rs1421746	0.82[ASN][1000 genomes]
rs1579284	0.86[EUR][1000 genomes]
rs2110359	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs245314	0.80[ASN][1000 genomes]
rs6595795	0.91[EUR][1000 genomes]
rs6864687	0.87[EUR][1000 genomes]
rs6874357	0.88[EUR][1000 genomes]
rs9285907	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv4992	chr5:127151699-127196349	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1797587	chr5:127156760-127196066	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127157600-127166000	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:127158000-127169800	Weak transcription	A549	lung
3	chr5:127160000-127166000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:127160600-127162800	Weak transcription	Fetal Kidney	kidney
5	chr5:127161200-127162400	Enhancers	NH-A	brain
6	chr5:127161200-127163600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:127161200-127163600	Enhancers	HSMM	muscle
8	chr5:127161200-127169800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:127161200-127170400	Weak transcription	Ovary	ovary
10	chr5:127161600-127162400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:127161800-127162200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:127161800-127162400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:127161800-127169600	Weak transcription	NHDF-Ad	bronchial
14	chr5:127162000-127162200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:127162000-127162200	Enhancers	NHLF	lung
16	chr5:127162000-127164600	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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