Variant report

Variant	rs2112277
Chromosome Location	chr5:95985670-95985671
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95985441..95987708-chr5:95989589..95992814,3	K562	blood:
2	chr5:95985044..95987422-chr5:95998320..96000663,2	MCF-7	breast:
3	chr5:95976037..95979831-chr5:95983868..95989174,6	MCF-7	breast:
4	chr5:95984144..95985957-chr5:95992996..95994996,2	K562	blood:
5	chr5:95982894..95985844-chr5:95986836..95989729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11738135	1.00[ASN][1000 genomes]
rs12188168	1.00[ASN][1000 genomes]
rs17082200	1.00[ASN][1000 genomes]
rs17086588	1.00[ASN][1000 genomes]
rs4869305	1.00[ASN][1000 genomes]
rs56116814	1.00[ASN][1000 genomes]
rs56257788	1.00[ASN][1000 genomes]
rs6879175	1.00[ASN][1000 genomes]
rs73774355	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95980800-95988200	Weak transcription	Placenta	Placenta
2	chr5:95982800-95986200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr5:95982800-95989600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:95983200-95986400	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr5:95983200-95986600	Enhancers	Fetal Intestine Large	intestine
6	chr5:95983200-95994200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:95983400-95986200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:95983400-95986200	Enhancers	Fetal Lung	lung
9	chr5:95983400-95986400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr5:95983600-95986200	Enhancers	Fetal Intestine Small	intestine
11	chr5:95983800-95986000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:95983800-95986000	Enhancers	Liver	Liver
13	chr5:95983800-95986000	Enhancers	HMEC	breast
14	chr5:95983800-95986200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:95983800-95990800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:95984400-95985800	Enhancers	HepG2	liver
17	chr5:95984400-95986000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:95984400-95986000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:95984400-95986000	Enhancers	Adipose Nuclei	Adipose
20	chr5:95984400-95986000	Enhancers	Stomach Mucosa	stomach
21	chr5:95984400-95986200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr5:95984400-95986200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:95984400-95986200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:95984400-95986200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr5:95984400-95986200	Enhancers	Hela-S3	cervix
26	chr5:95984400-95986400	Enhancers	Brain Substantia Nigra	brain
27	chr5:95984400-95986600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:95984400-95986800	Enhancers	Brain Anterior Caudate	brain
29	chr5:95984400-95987200	Enhancers	Fetal Kidney	kidney
30	chr5:95984400-95987400	Enhancers	Brain Cingulate Gyrus	brain
31	chr5:95984400-95987400	Enhancers	Brain Hippocampus Middle	brain
32	chr5:95984400-95987600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:95984400-95989200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:95984600-95986200	Enhancers	NHEK	skin
35	chr5:95984600-95986200	Enhancers	NHLF	lung
36	chr5:95984600-95988200	Weak transcription	Esophagus	oesophagus
37	chr5:95984800-95986600	Weak transcription	GM12878-XiMat	blood
38	chr5:95984800-95986600	Enhancers	NHDF-Ad	bronchial
39	chr5:95984800-95989400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr5:95984800-95991000	Weak transcription	Psoas Muscle	Psoas
41	chr5:95984800-95991400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:95985200-95986000	Enhancers	Osteobl	bone
43	chr5:95985200-95987200	Weak transcription	Small Intestine	intestine
44	chr5:95985200-95988400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:95985400-95986000	Enhancers	Brain Angular Gyrus	brain
46	chr5:95985400-95986200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:95985400-95986200	Enhancers	HSMM	muscle
48	chr5:95985400-95992000	Weak transcription	Pancreas	Pancrea
49	chr5:95985600-95985800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr5:95985600-95986000	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links