Variant report

Variant	rs2114302
Chromosome Location	chr3:101445900-101445901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101403699..101405565-chr3:101445331..101447834,2	K562	blood:
2	chr3:101444216..101445925-chr3:101446746..101448667,2	MCF-7	breast:
3	chr3:101394090..101397025-chr3:101443461..101445928,3	K562	blood:
4	chr3:101402475..101407282-chr3:101443751..101448081,5	K562	blood:

Variant related genes	Relation type
ENSG00000256628	Chromatin interaction
ENSG00000066422	Chromatin interaction
ENSG00000114391	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11708277	1.00[LWK][hapmap]
rs16844264	1.00[ASW][hapmap]
rs3897906	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101444600-101446800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:101444600-101447200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:101444600-101448000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:101444600-101450200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:101444600-101450400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:101444600-101450800	Weak transcription	Lung	lung
7	chr3:101444600-101451000	Weak transcription	Gastric	stomach
8	chr3:101444600-101452800	Weak transcription	Spleen	Spleen
9	chr3:101444600-101453200	Weak transcription	Pancreas	Pancrea
10	chr3:101444600-101454800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:101444800-101447600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:101444800-101447600	Weak transcription	Placenta	Placenta
13	chr3:101444800-101447800	Weak transcription	Left Ventricle	heart
14	chr3:101444800-101447800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:101444800-101448400	Weak transcription	Right Ventricle	heart
16	chr3:101444800-101450000	Weak transcription	Ovary	ovary
17	chr3:101444800-101450200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:101444800-101450400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:101444800-101451000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:101444800-101451000	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:101444800-101451000	Weak transcription	Esophagus	oesophagus
22	chr3:101444800-101451000	Weak transcription	Psoas Muscle	Psoas
23	chr3:101444800-101453400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:101444800-101454200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:101445000-101446000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr3:101445000-101446200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:101445000-101446200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:101445000-101446200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:101445000-101446200	Weak transcription	Fetal Muscle Leg	muscle
30	chr3:101445000-101446400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:101445000-101446400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:101445000-101446600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:101445000-101446800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr3:101445000-101446800	Weak transcription	Fetal Stomach	stomach
35	chr3:101445000-101447000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:101445000-101447000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:101445000-101447200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:101445000-101447200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:101445000-101447200	Weak transcription	Fetal Intestine Small	intestine
40	chr3:101445000-101447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:101445000-101447800	Weak transcription	Fetal Intestine Large	intestine
42	chr3:101445000-101447800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr3:101445000-101448400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr3:101445000-101448600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:101445000-101448800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:101445000-101449800	Weak transcription	HSMMtube	muscle
47	chr3:101445000-101450400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:101445000-101450600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr3:101445000-101450800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:101445000-101450800	Weak transcription	Aorta	Aorta

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